LINC02660

Summary

LINC02660 (long intergenic non-protein coding RNA 2660, HGNC:54146) is a long non-coding RNA gene on chromosome 10p15.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54146
Approved symbol	LINC02660
Name	long intergenic non-protein coding RNA 2660
Location	10p15.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000226005
Ensembl biotype	lncRNA
Entrez	101927904
RNAcentral	URS0000EF4633 — lncRNA, 1764 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 30 — 30 lncRNA

ENST00000432452, ENST00000648503, ENST00000655417, ENST00000656136, ENST00000657212, ENST00000664393, ENST00000687954, ENST00000691885, ENST00000692986, ENST00000724600, ENST00000724601, ENST00000724602, ENST00000724603, ENST00000724604, ENST00000724605, ENST00000724606, ENST00000724607, ENST00000724608, ENST00000724609, ENST00000724610, ENST00000724611, ENST00000724612, ENST00000724613, ENST00000724614, ENST00000724615, ENST00000724616, ENST00000724617, ENST00000724618, ENST00000724619, ENST00000724620

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000432452 — 2 exons

Exon	Start	End
ENSE00001664429	3935679	3935813
ENSE00001720291	3934519	3934974

Expression profiles

Bgee: expression breadth ubiquitous, 115 present calls, max score 82.66.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.2053 / max 35.2174, expressed in 64 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
103559	0.1042	42
103560	0.0685	24
103561	0.0326	12

Top tissues by expression

115 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
apex of heart	UBERON:0002098	82.66	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.97	silver quality
sural nerve	UBERON:0015488	79.41	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	78.24	gold quality
heart left ventricle	UBERON:0002084	76.22	gold quality
skin of abdomen	UBERON:0001416	72.36	gold quality
heart	UBERON:0000948	72.27	gold quality
right atrium auricular region	UBERON:0006631	72.08	gold quality
zone of skin	UBERON:0000014	71.72	gold quality
skin of leg	UBERON:0001511	71.26	gold quality
urinary bladder	UBERON:0001255	67.25	gold quality
calcaneal tendon	UBERON:0003701	66.83	gold quality
colonic epithelium	UBERON:0000397	65.21	silver quality
hindlimb stylopod muscle	UBERON:0004252	63.47	gold quality
smooth muscle tissue	UBERON:0001135	62.97	gold quality
lower esophagus muscularis layer	UBERON:0035833	61.77	gold quality
lower esophagus	UBERON:0013473	61.70	gold quality
thoracic mammary gland	UBERON:0005200	60.27	gold quality
omental fat pad	UBERON:0010414	58.69	gold quality
skeletal muscle tissue	UBERON:0001134	58.49	gold quality
corpus callosum	UBERON:0002336	57.00	gold quality
prostate gland	UBERON:0002367	56.60	gold quality
placenta	UBERON:0001987	56.17	gold quality
esophagus	UBERON:0001043	55.96	gold quality
vermiform appendix	UBERON:0001154	55.90	gold quality
left uterine tube	UBERON:0001303	55.83	gold quality
myometrium	UBERON:0001296	55.81	gold quality
muscle of leg	UBERON:0001383	55.78	gold quality
mucosa of stomach	UBERON:0001199	55.53	gold quality
liver	UBERON:0002107	55.49	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.29

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.