LINC02663

Summary

LINC02663 (long intergenic non-protein coding RNA 2663, HGNC:54149) is a long non-coding RNA gene on chromosome 10p14.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54149
Approved symbol	LINC02663
Name	long intergenic non-protein coding RNA 2663
Location	10p14
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000228636
Ensembl biotype	lncRNA
Entrez	105376402
RNAcentral	URS0002A56337 — lncRNA, 1571 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 6 — 6 lncRNA

ENST00000419836, ENST00000647601, ENST00000659451, ENST00000840890, ENST00000840891, ENST00000840892

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000419836 — 2 exons

Exon	Start	End
ENSE00001606593	9759079	9759237
ENSE00001764695	9758783	9758967

Expression profiles

Bgee: expression breadth broad, 86 present calls, max score 93.57.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1306 / max 53.2280, expressed in 36 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
108226	0.0916	36
108225	0.0390	3

Top tissues by expression

86 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
left testis	UBERON:0004533	93.57	gold quality
right testis	UBERON:0004534	93.37	gold quality
testis	UBERON:0000473	92.52	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	89.10	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	84.90	gold quality
bone marrow cell	CL:0002092	78.22	gold quality
right adrenal gland cortex	UBERON:0035827	61.56	gold quality
gall bladder	UBERON:0002110	60.75	gold quality
multicellular organism	UBERON:0000468	59.55	gold quality
monocyte	CL:0000576	58.34	gold quality
islet of Langerhans	UBERON:0000006	56.73	gold quality
blood	UBERON:0000178	55.90	gold quality
prefrontal cortex	UBERON:0000451	55.51	gold quality
muscle of leg	UBERON:0001383	54.08	gold quality
gastrocnemius	UBERON:0001388	53.77	gold quality
duodenum	UBERON:0002114	53.44	gold quality
placenta	UBERON:0001987	53.06	gold quality
heart left ventricle	UBERON:0002084	52.60	gold quality
left adrenal gland	UBERON:0001234	52.54	gold quality
body of pancreas	UBERON:0001150	50.56	gold quality
body of stomach	UBERON:0001161	49.36	gold quality
liver	UBERON:0002107	49.36	gold quality
stomach	UBERON:0000945	49.28	gold quality
ascending aorta	UBERON:0001496	48.51	gold quality
thoracic aorta	UBERON:0001515	48.43	gold quality
tonsil	UBERON:0002372	48.28	gold quality
tibial artery	UBERON:0007610	48.28	gold quality
muscle layer of sigmoid colon	UBERON:0035805	48.12	gold quality
corpus callosum	UBERON:0002336	48.02	silver quality
lower esophagus muscularis layer	UBERON:0035833	47.70	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.62

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.