LINC02669

Summary

LINC02669 (long intergenic non-protein coding RNA 2669, HGNC:54155) is a long non-coding RNA gene on chromosome 10p15.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54155
Approved symbol	LINC02669
Name	long intergenic non-protein coding RNA 2669
Location	10p15.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000233321
Ensembl biotype	lncRNA
Entrez	101927880
RNAcentral	URS0000D77F2C — lncRNA, 1654 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 36 — 36 lncRNA

ENST00000413993, ENST00000655104, ENST00000656403, ENST00000656568, ENST00000658910, ENST00000659295, ENST00000659369, ENST00000659699, ENST00000659887, ENST00000660786, ENST00000660919, ENST00000664039, ENST00000664866, ENST00000665584, ENST00000666496, ENST00000668764, ENST00000668930, ENST00000669330, ENST00000670496, ENST00000670953, ENST00000685074, ENST00000701952, ENST00000783314, ENST00000783315, ENST00000783316, ENST00000783317, ENST00000783318, ENST00000783319, ENST00000783320, ENST00000783321, ENST00000783322, ENST00000783323, ENST00000783324, ENST00000783325, ENST00000783326, ENST00000783327

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000413993 — 5 exons

Exon	Start	End
ENSE00001650295	3497653	3497724
ENSE00001675788	3486631	3487010
ENSE00001718902	3499184	3499234
ENSE00001722968	3502331	3502915
ENSE00001806594	3496153	3496236

Expression profiles

Bgee: expression breadth ubiquitous, 119 present calls, max score 85.35.

Top tissues by expression

119 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	85.35	gold quality
subcutaneous adipose tissue	UBERON:0002190	74.85	gold quality
right testis	UBERON:0004534	71.32	gold quality
endometrium	UBERON:0001295	70.10	gold quality
testis	UBERON:0000473	69.53	gold quality
left testis	UBERON:0004533	68.83	gold quality
adipose tissue	UBERON:0001013	67.90	gold quality
skin of leg	UBERON:0001511	67.73	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	66.71	gold quality
zone of skin	UBERON:0000014	66.00	gold quality
placenta	UBERON:0001987	65.23	gold quality
sural nerve	UBERON:0015488	65.11	gold quality
calcaneal tendon	UBERON:0003701	64.86	gold quality
skin of abdomen	UBERON:0001416	63.61	gold quality
thoracic mammary gland	UBERON:0005200	61.19	gold quality
corpus callosum	UBERON:0002336	59.94	gold quality
omental fat pad	UBERON:0010414	59.67	gold quality
blood	UBERON:0000178	58.99	gold quality
tibial nerve	UBERON:0001323	58.91	gold quality
urinary bladder	UBERON:0001255	57.33	gold quality
ganglionic eminence	UBERON:0004023	57.11	silver quality
skeletal muscle tissue	UBERON:0001134	56.87	gold quality
tonsil	UBERON:0002372	56.51	gold quality
liver	UBERON:0002107	55.86	gold quality
smooth muscle tissue	UBERON:0001135	55.64	gold quality
gall bladder	UBERON:0002110	54.80	gold quality
tibial artery	UBERON:0007610	54.72	gold quality
popliteal artery	UBERON:0002250	54.69	gold quality
leukocyte	CL:0000738	54.60	silver quality
superior frontal gyrus	UBERON:0002661	54.56	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	2.79

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.