LINC02672

Summary

LINC02672 (long intergenic non-protein coding RNA 2672, HGNC:54159) is a long non-coding RNA gene on chromosome 10q21.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54159
Approved symbol	LINC02672
Name	long intergenic non-protein coding RNA 2672
Location	10q21.1
Locus type	RNA, long non-coding
Status	Approved
Aliases	OIN1
Ensembl gene	ENSG00000227121
Ensembl biotype	lncRNA
Entrez	105378309
RNAcentral	URS00026A1CB8 — lncRNA, 2047 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 6 — 6 lncRNA

ENST00000444155, ENST00000654808, ENST00000668157, ENST00000718647, ENST00000765539, ENST00000765540

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000444155 — 3 exons

Exon	Start	End
ENSE00001766874	52974665	52974800
ENSE00001799433	52973488	52973690
ENSE00001801947	52975740	52975815

Expression profiles

Bgee: expression breadth broad, 95 present calls, max score 94.10.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.3106 / max 150.0327, expressed in 77 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
109409	0.3106	77

Top tissues by expression

100 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
bone marrow	UBERON:0002371	94.10	silver quality
thymus	UBERON:0002370	88.58	silver quality
right uterine tube	UBERON:0001302	88.38	gold quality
skeletal muscle tissue	UBERON:0001134	87.96	silver quality
quadriceps femoris	UBERON:0001377	85.75	gold quality
cerebellar vermis	UBERON:0004720	83.35	gold quality
thyroid gland	UBERON:0002046	71.06	gold quality
left lobe of thyroid gland	UBERON:0001120	70.47	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	69.43	gold quality
right lobe of thyroid gland	UBERON:0001119	69.22	gold quality
kidney	UBERON:0002113	69.20	gold quality
right lobe of liver	UBERON:0001114	69.19	gold quality
liver	UBERON:0002107	68.73	gold quality
adult mammalian kidney	UBERON:0000082	67.86	gold quality
fallopian tube	UBERON:0003889	66.75	gold quality
endometrium	UBERON:0001295	66.12	gold quality
endocervix	UBERON:0000458	62.08	gold quality
cortex of kidney	UBERON:0001225	61.99	gold quality
metanephros cortex	UBERON:0010533	61.15	gold quality
placenta	UBERON:0001987	60.32	gold quality
urinary bladder	UBERON:0001255	56.88	gold quality
monocyte	CL:0000576	52.37	silver quality
multicellular organism	UBERON:0000468	52.15	gold quality
prefrontal cortex	UBERON:0000451	50.76	gold quality
duodenum	UBERON:0002114	50.49	gold quality
blood	UBERON:0000178	50.38	gold quality
cerebellar cortex	UBERON:0002129	48.68	silver quality
cerebellar hemisphere	UBERON:0002245	48.64	silver quality
muscle of leg	UBERON:0001383	48.05	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	47.97	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.13

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.