LINC02682

Summary

LINC02682 (long intergenic non-protein coding RNA 2682, HGNC:54177) is a long non-coding RNA gene on chromosome 11p15.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54177
Approved symbol	LINC02682
Name	long intergenic non-protein coding RNA 2682
Location	11p15.2
Locus type	RNA, long non-coding
Status	Approved
Aliases	TCONS_00019584, lnc-SOX6-1
Ensembl gene	ENSG00000254661
Ensembl biotype	lncRNA
Entrez	105376570
RNAcentral	URS00026A26F2 — lncRNA, 1370 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 21 — 21 lncRNA

ENST00000530418, ENST00000662912, ENST00000663478, ENST00000664116, ENST00000664817, ENST00000664884, ENST00000666053, ENST00000667221, ENST00000668376, ENST00000668712, ENST00000669725, ENST00000670379, ENST00000670509, ENST00000757694, ENST00000757695, ENST00000757696, ENST00000757697, ENST00000757698, ENST00000757699, ENST00000757700, ENST00000757701

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000530418 — 4 exons

Exon	Start	End
ENSE00002172020	15911782	15911884
ENSE00002198393	15923284	15923382
ENSE00003858061	15927232	15927967
ENSE00003867485	15910930	15911070

Expression profiles

Bgee: expression breadth broad, 77 present calls, max score 85.54.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0039 / max 3.6087, expressed in 2 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
113242	0.0039	2

Top tissues by expression

77 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	85.54	gold quality
right testis	UBERON:0004534	65.40	gold quality
testis	UBERON:0000473	65.24	gold quality
left testis	UBERON:0004533	65.01	gold quality
liver	UBERON:0002107	63.99	silver quality
tibial artery	UBERON:0007610	63.13	gold quality
popliteal artery	UBERON:0002250	63.10	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	62.39	gold quality
right coronary artery	UBERON:0001625	60.58	gold quality
left coronary artery	UBERON:0001626	56.72	gold quality
mucosa of stomach	UBERON:0001199	54.13	gold quality
blood	UBERON:0000178	53.36	gold quality
multicellular organism	UBERON:0000468	53.34	gold quality
monocyte	CL:0000576	53.02	gold quality
fundus of stomach	UBERON:0001160	53.02	gold quality
hindlimb stylopod muscle	UBERON:0004252	51.55	silver quality
islet of Langerhans	UBERON:0000006	51.36	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	51.29	gold quality
urinary bladder	UBERON:0001255	49.84	gold quality
heart	UBERON:0000948	49.25	gold quality
lung	UBERON:0002048	48.07	gold quality
thoracic aorta	UBERON:0001515	47.87	gold quality
ascending aorta	UBERON:0001496	47.80	gold quality
left ovary	UBERON:0002119	47.67	gold quality
placenta	UBERON:0001987	47.37	gold quality
descending thoracic aorta	UBERON:0002345	47.29	gold quality
mucosa of transverse colon	UBERON:0004991	47.22	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	47.04	silver quality
muscle of leg	UBERON:0001383	47.03	gold quality
gall bladder	UBERON:0002110	46.47	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.48

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.