LINC02688

Summary

LINC02688 (long intergenic non-protein coding RNA 2688, HGNC:54184) is a long non-coding RNA gene on chromosome 11p15.5.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54184
Approved symbol	LINC02688
Name	long intergenic non-protein coding RNA 2688
Location	11p15.5
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000254872
Ensembl biotype	lncRNA
Entrez	101927503
RNAcentral	URS0000E60B51 — lncRNA, 1109 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 7 — 7 lncRNA

ENST00000534584, ENST00000617529, ENST00000737478, ENST00000737479, ENST00000737480, ENST00000737481, ENST00000737482

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000534584 — 5 exons

Exon	Start	End
ENSE00002154953	1054239	1054392
ENSE00002199784	1051623	1051843
ENSE00004071809	1049879	1049962
ENSE00004071813	1040744	1040919
ENSE00004071814	1055114	1055752

Expression profiles

Bgee: expression breadth ubiquitous, 118 present calls, max score 81.04.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1083 / max 84.7178, expressed in 14 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
112351	0.0575	12
112353	0.0370	5
112352	0.0137	4

Top tissues by expression

118 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
duodenum	UBERON:0002114	81.04	gold quality
spleen	UBERON:0002106	75.92	gold quality
gall bladder	UBERON:0002110	70.76	gold quality
nucleus accumbens	UBERON:0001882	70.27	gold quality
bone marrow cell	CL:0002092	69.80	silver quality
body of stomach	UBERON:0001161	67.31	gold quality
stomach	UBERON:0000945	66.94	gold quality
bone marrow	UBERON:0002371	66.86	gold quality
endocervix	UBERON:0000458	66.78	gold quality
body of pancreas	UBERON:0001150	66.53	gold quality
putamen	UBERON:0001874	66.50	gold quality
mucosa of transverse colon	UBERON:0004991	66.08	gold quality
cortex of kidney	UBERON:0001225	65.77	gold quality
caudate nucleus	UBERON:0001873	65.42	gold quality
transverse colon	UBERON:0001157	64.38	gold quality
rectum	UBERON:0001052	64.31	gold quality
mucosa of stomach	UBERON:0001199	63.26	gold quality
pancreas	UBERON:0001264	62.83	gold quality
right uterine tube	UBERON:0001302	62.56	gold quality
small intestine	UBERON:0002108	62.35	gold quality
metanephros cortex	UBERON:0010533	62.14	gold quality
small intestine Peyer’s patch	UBERON:0003454	61.95	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	61.93	gold quality
right hemisphere of cerebellum	UBERON:0014890	61.83	gold quality
prostate gland	UBERON:0002367	61.45	gold quality
kidney	UBERON:0002113	60.80	gold quality
cerebellar cortex	UBERON:0002129	60.26	gold quality
cerebellar hemisphere	UBERON:0002245	60.23	gold quality
cerebellum	UBERON:0002037	60.15	gold quality
intestine	UBERON:0000160	59.96	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	6.23

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.