LINC02689

Summary

LINC02689 (long intergenic non-protein coding RNA 2689, HGNC:54192) is a long non-coding RNA gene on chromosome 11p15.5.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54192
Approved symbol	LINC02689
Name	long intergenic non-protein coding RNA 2689
Location	11p15.5
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000285985
Ensembl biotype	lncRNA
Entrez	105376513
RNAcentral	URS0000DB9A61 — lncRNA, 1458 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000650218, ENST00000800040

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000650218 — 5 exons

Exon	Start	End
ENSE00003832653	1360715	1360808
ENSE00003833987	1350359	1350762
ENSE00003836719	1363561	1364286
ENSE00003840736	1362954	1363017
ENSE00003840840	1362678	1362847

Expression profiles

Bgee: expression breadth broad, 34 present calls, max score 57.70.

Top tissues by expression

34 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
cortical plate	UBERON:0005343	57.70	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	57.40	gold quality
subcutaneous adipose tissue	UBERON:0002190	50.09	silver quality
prefrontal cortex	UBERON:0000451	49.35	silver quality
right testis	UBERON:0004534	49.08	gold quality
testis	UBERON:0000473	48.15	gold quality
left testis	UBERON:0004533	47.93	gold quality
monocyte	CL:0000576	47.61	silver quality
muscle of leg	UBERON:0001383	44.52	silver quality
substantia nigra	UBERON:0002038	44.23	gold quality
Brodmann (1909) area 9	UBERON:0013540	43.22	silver quality
primary visual cortex	UBERON:0002436	42.92	silver quality
dorsolateral prefrontal cortex	UBERON:0009834	42.58	silver quality
islet of Langerhans	UBERON:0000006	42.32	silver quality
cerebral cortex	UBERON:0000956	42.30	silver quality
caudate nucleus	UBERON:0001873	41.76	silver quality
superior frontal gyrus	UBERON:0002661	41.75	silver quality
amygdala	UBERON:0001876	41.53	silver quality
gastrocnemius	UBERON:0001388	41.27	silver quality
fallopian tube	UBERON:0003889	41.03	silver quality
left ovary	UBERON:0002119	40.32	silver quality
ascending aorta	UBERON:0001496	39.53	silver quality
body of stomach	UBERON:0001161	39.41	silver quality
putamen	UBERON:0001874	39.02	silver quality
spleen	UBERON:0002106	38.93	silver quality
anterior cingulate cortex	UBERON:0009835	38.85	silver quality
right frontal lobe	UBERON:0002810	38.80	silver quality
hypothalamus	UBERON:0001898	38.57	silver quality
tibial artery	UBERON:0007610	38.15	silver quality
nucleus accumbens	UBERON:0001882	37.85	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.48

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.