LINC02693

Summary

LINC02693 (long intergenic non-protein coding RNA 2693, HGNC:27904) is a long non-coding RNA gene on chromosome 17p11.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:27904
Approved symbol	LINC02693
Name	long intergenic non-protein coding RNA 2693
Location	17p11.2
Locus type	RNA, long non-coding
Status	Approved
Aliases	FLJ12977, FLJ31874, FLJ33618
Ensembl gene	ENSG00000212719
Ensembl biotype	lncRNA
Entrez	339263
RNAcentral	URS0000E60B12 — lncRNA, 7912 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 39 — 39 lncRNA

ENST00000412778, ENST00000426261, ENST00000468381, ENST00000535846, ENST00000536958, ENST00000538604, ENST00000540508, ENST00000647872, ENST00000649041, ENST00000649112, ENST00000650318, ENST00000652925, ENST00000653508, ENST00000654263, ENST00000655246, ENST00000656879, ENST00000657015, ENST00000657905, ENST00000658783, ENST00000659175, ENST00000659749, ENST00000661785, ENST00000663437, ENST00000663530, ENST00000666869, ENST00000667136, ENST00000669595, ENST00000671646, ENST00000686062, ENST00000686415, ENST00000692999, ENST00000693484, ENST00000700860, ENST00000701171, ENST00000701727, ENST00000702081, ENST00000717506, ENST00000717507, ENST00000717508

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000412778 — 3 exons

Exon	Start	End
ENSE00001811907	21535428	21535538
ENSE00003835421	21550996	21551669
ENSE00003877286	21512189	21512274

Expression profiles

Bgee: expression breadth ubiquitous, 242 present calls, max score 95.17.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 8.2747 / max 202.4080, expressed in 1519 samples.

FANTOM5 promoters (4 alternative TSS)

Promoter ID	TPM avg	Samples expressed
164937	7.6808	1512
164938	0.3684	135
208094	0.2186	112
164934	0.0069	3

Top tissues by expression

255 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
cerebellar hemisphere	UBERON:0002245	95.17	gold quality
cerebellar cortex	UBERON:0002129	95.06	gold quality
right hemisphere of cerebellum	UBERON:0014890	94.92	gold quality
cerebellum	UBERON:0002037	94.08	gold quality
vena cava	UBERON:0004087	92.66	gold quality
tendon of biceps brachii	UBERON:0008188	90.86	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	89.87	gold quality
myocardium	UBERON:0002349	89.74	silver quality
right frontal lobe	UBERON:0002810	89.55	gold quality
Brodmann (1909) area 9	UBERON:0013540	89.24	gold quality
cortical plate	UBERON:0005343	88.74	gold quality
right testis	UBERON:0004534	88.66	gold quality
upper arm skin	UBERON:0004263	88.43	silver quality
sperm	CL:0000019	88.21	gold quality
kidney epithelium	UBERON:0004819	88.12	gold quality
left testis	UBERON:0004533	88.10	gold quality
prefrontal cortex	UBERON:0000451	88.01	gold quality
anterior cingulate cortex	UBERON:0009835	88.00	gold quality
nasal cavity epithelium	UBERON:0005384	87.84	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	87.44	gold quality
left ventricle myocardium	UBERON:0006566	87.30	gold quality
parotid gland	UBERON:0001831	87.10	silver quality
frontal cortex	UBERON:0001870	87.08	gold quality
buccal mucosa cell	CL:0002336	87.02	silver quality
neocortex	UBERON:0001950	86.96	gold quality
nucleus accumbens	UBERON:0001882	86.93	gold quality
body of tongue	UBERON:0011876	86.85	gold quality
putamen	UBERON:0001874	86.62	gold quality
brain	UBERON:0000955	86.41	gold quality
amygdala	UBERON:0001876	86.17	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	6.30

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.