LINC02694

Summary

LINC02694 (long intergenic non-protein coding RNA 2694, HGNC:33796) is a long non-coding RNA gene on chromosome 15q14.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:33796
Approved symbol	LINC02694
Name	long intergenic non-protein coding RNA 2694
Location	15q14
Locus type	RNA, long non-coding
Status	Approved
Aliases	FLJ35695
Ensembl gene	ENSG00000175779
Ensembl biotype	lncRNA
Entrez	400359
RNAcentral	URS0000D6130C — lncRNA, 2043 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 36 — 36 lncRNA

ENST00000557946, ENST00000558255, ENST00000560129, ENST00000560203, ENST00000560259, ENST00000643127, ENST00000643648, ENST00000644461, ENST00000645416, ENST00000645994, ENST00000646232, ENST00000647456, ENST00000663018, ENST00000700771, ENST00000791581, ENST00000791582, ENST00000791583, ENST00000791584, ENST00000791585, ENST00000791586, ENST00000791587, ENST00000791588, ENST00000791589, ENST00000791590, ENST00000791591, ENST00000791592, ENST00000791593, ENST00000824475, ENST00000824476, ENST00000824477, ENST00000824478, ENST00000824479, ENST00000824480, ENST00000824732, ENST00000824733, ENST00000831755

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000557946 — 4 exons

Exon	Start	End
ENSE00002563533	38676394	38676454
ENSE00002564054	38672618	38672757
ENSE00002565074	38677787	38678008
ENSE00002569748	38671855	38671940

Expression profiles

Bgee: expression breadth ubiquitous, 125 present calls, max score 78.82.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.8079 / max 141.6740, expressed in 93 samples.

FANTOM5 promoters (6 alternative TSS)

Promoter ID	TPM avg	Samples expressed
145876	0.6140	60
145874	0.1002	48
145877	0.0408	17
145869	0.0206	4
145875	0.0165	11
145873	0.0158	8

Top tissues by expression

125 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	78.82	silver quality
bone marrow cell	CL:0002092	71.15	silver quality
tonsil	UBERON:0002372	69.31	gold quality
colonic epithelium	UBERON:0000397	69.15	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	68.66	gold quality
lymph node	UBERON:0000029	67.03	gold quality
bone marrow	UBERON:0002371	66.33	gold quality
cortical plate	UBERON:0005343	66.11	gold quality
vermiform appendix	UBERON:0001154	63.09	gold quality
blood	UBERON:0000178	61.77	gold quality
leukocyte	CL:0000738	61.33	gold quality
monocyte	CL:0000576	60.86	gold quality
ectocervix	UBERON:0012249	60.60	gold quality
granulocyte	CL:0000094	60.21	gold quality
esophagus mucosa	UBERON:0002469	58.74	gold quality
lower esophagus mucosa	UBERON:0035834	57.27	gold quality
urinary bladder	UBERON:0001255	57.05	gold quality
gastrocnemius	UBERON:0001388	56.98	gold quality
gall bladder	UBERON:0002110	56.80	gold quality
muscle of leg	UBERON:0001383	56.74	gold quality
muscle tissue	UBERON:0002385	56.48	gold quality
esophagus	UBERON:0001043	56.03	gold quality
hindlimb stylopod muscle	UBERON:0004252	55.13	gold quality
calcaneal tendon	UBERON:0003701	54.62	silver quality
uterine cervix	UBERON:0000002	54.44	gold quality
skeletal muscle tissue	UBERON:0001134	54.43	silver quality
liver	UBERON:0002107	54.20	gold quality
prefrontal cortex	UBERON:0000451	54.00	gold quality
islet of Langerhans	UBERON:0000006	53.52	gold quality
spleen	UBERON:0002106	53.25	gold quality

Single-cell (SCXA)

Detected in 2 experiment(s), a significant marker in 2.

Experiment	Marker?	Max mean expression
E-CURD-119	yes	31.49
E-ANND-3	yes	6.14

Regulation

Is transcription factor: no

Literature-anchored findings (GeneRIF, showing 1)

• This family-based GWAS identified SNPs in C15orf53 that are strongly associated with DSM-IV alcohol-dependence symptoms. (PMID:23089632)

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.