LINC02700

Summary

LINC02700 (long intergenic non-protein coding RNA 2700, HGNC:54214) is a long non-coding RNA gene on chromosome 11q21.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54214
Approved symbol	LINC02700
Name	long intergenic non-protein coding RNA 2700
Location	11q21
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000255666
Ensembl biotype	lncRNA
Entrez	105369436
RNAcentral	URS00026A2365 — lncRNA, 7178 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 16 — 16 lncRNA

ENST00000540151, ENST00000541293, ENST00000542479, ENST00000544019, ENST00000648581, ENST00000716168, ENST00000716169, ENST00000768268, ENST00000768269, ENST00000768270, ENST00000768271, ENST00000768272, ENST00000768273, ENST00000768274, ENST00000768275, ENST00000768276

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000540151 — 6 exons

Exon	Start	End
ENSE00002228281	94650474	94650537
ENSE00002228755	94647335	94647578
ENSE00002241905	94648260	94648388
ENSE00002293231	94651477	94651631
ENSE00003879896	94638070	94638353
ENSE00003884175	94643970	94644153

Expression profiles

Bgee: expression breadth ubiquitous, 116 present calls, max score 65.16.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0055 / max 4.5108, expressed in 3 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
116268	0.0055	3

Top tissues by expression

116 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	65.16	silver quality
right testis	UBERON:0004534	64.06	gold quality
left testis	UBERON:0004533	63.66	gold quality
testis	UBERON:0000473	63.63	gold quality
placenta	UBERON:0001987	60.90	gold quality
monocyte	CL:0000576	60.75	gold quality
bone marrow cell	CL:0002092	60.67	silver quality
leukocyte	CL:0000738	60.56	gold quality
colonic epithelium	UBERON:0000397	60.06	silver quality
ganglionic eminence	UBERON:0004023	58.01	gold quality
calcaneal tendon	UBERON:0003701	55.92	gold quality
lymph node	UBERON:0000029	55.53	gold quality
corpus callosum	UBERON:0002336	55.24	gold quality
gall bladder	UBERON:0002110	54.94	gold quality
sural nerve	UBERON:0015488	54.27	silver quality
blood	UBERON:0000178	53.66	gold quality
ectocervix	UBERON:0012249	53.36	gold quality
endometrium	UBERON:0001295	53.13	silver quality
smooth muscle tissue	UBERON:0001135	52.42	gold quality
duodenum	UBERON:0002114	52.04	gold quality
prefrontal cortex	UBERON:0000451	51.77	gold quality
liver	UBERON:0002107	51.70	gold quality
superior frontal gyrus	UBERON:0002661	50.55	gold quality
esophagus mucosa	UBERON:0002469	50.11	gold quality
endocervix	UBERON:0000458	49.75	gold quality
muscle of leg	UBERON:0001383	49.56	gold quality
left uterine tube	UBERON:0001303	49.46	gold quality
gastrocnemius	UBERON:0001388	48.59	gold quality
vermiform appendix	UBERON:0001154	48.47	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	48.24	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.43

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.