LINC02709

Summary

LINC02709 (long intergenic non-protein coding RNA 2709, HGNC:54226) is a long non-coding RNA gene on chromosome 11p15.4.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54226
Approved symbol	LINC02709
Name	long intergenic non-protein coding RNA 2709
Location	11p15.4
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000245522
Ensembl biotype	lncRNA
Entrez	440028
RNAcentral	URS0000565587 — lncRNA, 2311 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000500698, ENST00000525154

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000500698 — 3 exons

Exon	Start	End
ENSE00001960718	9757767	9757843
ENSE00001966562	9759429	9759533
ENSE00001990918	9754770	9756898

Expression profiles

Bgee: expression breadth ubiquitous, 114 present calls, max score 81.65.

FANTOM5 (CAGE): breadth broad, TPM avg 1.2728 / max 70.8412, expressed in 400 samples.

FANTOM5 promoters (5 alternative TSS)

Promoter ID	TPM avg	Samples expressed
118580	0.5396	113
118578	0.5089	199
118579	0.1434	57
118577	0.0540	13
118576	0.0270	10

Top tissues by expression

204 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
secondary oocyte	CL:0000655	81.65	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	75.80	gold quality
oocyte	CL:0000023	74.80	gold quality
stromal cell of endometrium	CL:0002255	70.46	gold quality
cartilage tissue	UBERON:0002418	67.34	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	64.79	gold quality
sural nerve	UBERON:0015488	61.87	silver quality
islet of Langerhans	UBERON:0000006	58.68	gold quality
ventricular zone	UBERON:0003053	58.58	silver quality
hindlimb stylopod muscle	UBERON:0004252	56.24	gold quality
ganglionic eminence	UBERON:0004023	55.92	silver quality
mucosa of transverse colon	UBERON:0004991	53.40	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	52.13	gold quality
buccal mucosa cell	CL:0002336	51.97	gold quality
calcaneal tendon	UBERON:0003701	51.67	silver quality
placenta	UBERON:0001987	50.65	gold quality
muscle of leg	UBERON:0001383	50.62	gold quality
pancreas	UBERON:0001264	50.60	gold quality
gastrocnemius	UBERON:0001388	50.38	gold quality
rectum	UBERON:0001052	49.98	gold quality
lymph node	UBERON:0000029	49.95	gold quality
prefrontal cortex	UBERON:0000451	49.75	silver quality
subcutaneous adipose tissue	UBERON:0002190	48.35	gold quality
cortex of kidney	UBERON:0001225	48.20	gold quality
skin of hip	UBERON:0001554	47.66	silver quality
vermiform appendix	UBERON:0001154	47.10	silver quality
right lobe of liver	UBERON:0001114	47.08	silver quality
ectocervix	UBERON:0012249	46.99	gold quality
gall bladder	UBERON:0002110	46.35	gold quality
transverse colon	UBERON:0001157	46.13	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.53

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.