LINC02712

Summary

LINC02712 (long intergenic non-protein coding RNA 2712, HGNC:54229) is a long non-coding RNA gene on chromosome 11q24.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54229
Approved symbol	LINC02712
Name	long intergenic non-protein coding RNA 2712
Location	11q24.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000273409
Ensembl biotype	lncRNA
Entrez	101929497
RNAcentral	URS000075B56C — lncRNA, 509 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000608214, ENST00000637808, ENST00000748492, ENST00000748493, ENST00000748494

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000608214 — 3 exons

Exon	Start	End
ENSE00003706331	127335024	127335145
ENSE00003706478	127271031	127271173
ENSE00004091368	127336765	127337035

Expression profiles

Bgee: expression breadth ubiquitous, 130 present calls, max score 94.66.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1689 / max 28.7072, expressed in 58 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
117529	0.1689	58

Top tissues by expression

210 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
buccal mucosa cell	CL:0002336	94.66	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	82.35	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	79.26	gold quality
sural nerve	UBERON:0015488	78.18	silver quality
C1 segment of cervical spinal cord	UBERON:0006469	72.77	gold quality
spinal cord	UBERON:0002240	70.83	gold quality
ventricular zone	UBERON:0003053	70.42	gold quality
hindlimb stylopod muscle	UBERON:0004252	69.48	gold quality
ganglionic eminence	UBERON:0004023	68.11	gold quality
prefrontal cortex	UBERON:0000451	67.04	gold quality
substantia nigra	UBERON:0002038	66.17	gold quality
caudate nucleus	UBERON:0001873	65.83	gold quality
midbrain	UBERON:0001891	64.49	gold quality
hypothalamus	UBERON:0001898	64.34	gold quality
nucleus accumbens	UBERON:0001882	63.78	gold quality
putamen	UBERON:0001874	62.89	gold quality
corpus callosum	UBERON:0002336	62.49	gold quality
amygdala	UBERON:0001876	62.47	gold quality
Brodmann (1909) area 9	UBERON:0013540	61.83	gold quality
monocyte	CL:0000576	61.39	gold quality
gingival epithelium	UBERON:0001949	61.01	gold quality
endocervix	UBERON:0000458	60.58	gold quality
inferior vagus X ganglion	UBERON:0005363	60.16	gold quality
anterior cingulate cortex	UBERON:0009835	59.20	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	58.61	gold quality
frontal cortex	UBERON:0001870	58.35	gold quality
forebrain	UBERON:0001890	58.11	gold quality
neocortex	UBERON:0001950	58.08	gold quality
brain	UBERON:0000955	57.55	gold quality
germinal epithelium of ovary	UBERON:0001304	57.48	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.77

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.