LINC02716

Summary

LINC02716 (long intergenic non-protein coding RNA 2716, HGNC:25454) is a long non-coding RNA gene on chromosome 11p11.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:25454
Approved symbol	LINC02716
Name	long intergenic non-protein coding RNA 2716
Location	11p11.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000205106
Ensembl biotype	lncRNA
Entrez	374387
RNAcentral	URS000075E6BC — lncRNA, 665 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000378779, ENST00000811721

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000378779 — 2 exons

Exon	Start	End
ENSE00001478706	45771993	45773295
ENSE00004209968	45771390	45771714

Expression profiles

Bgee: expression breadth ubiquitous, 172 present calls, max score 86.94.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1410 / max 6.5249, expressed in 68 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
114029	0.1410	68

Top tissues by expression

234 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
cardiac muscle of right atrium	UBERON:0003379	86.94	gold quality
left ventricle myocardium	UBERON:0006566	86.49	gold quality
apex of heart	UBERON:0002098	85.89	gold quality
deltoid	UBERON:0001476	81.13	silver quality
hindlimb stylopod muscle	UBERON:0004252	81.12	gold quality
tibialis anterior	UBERON:0001385	81.08	silver quality
upper arm skin	UBERON:0004263	80.79	gold quality
skeletal muscle tissue of biceps brachii	UBERON:0004502	79.45	silver quality
gastrocnemius	UBERON:0001388	79.38	gold quality
muscle of leg	UBERON:0001383	79.12	gold quality
biceps brachii	UBERON:0001507	78.92	silver quality
skeletal muscle tissue	UBERON:0001134	78.87	gold quality
buccal mucosa cell	CL:0002336	78.81	gold quality
kidney epithelium	UBERON:0004819	78.50	gold quality
vena cava	UBERON:0004087	78.47	gold quality
colonic epithelium	UBERON:0000397	78.16	gold quality
lateral globus pallidus	UBERON:0002476	78.14	silver quality
substantia nigra pars reticulata	UBERON:0001966	78.09	silver quality
cerebellar vermis	UBERON:0004720	78.05	gold quality
substantia nigra pars compacta	UBERON:0001965	77.72	gold quality
lateral nuclear group of thalamus	UBERON:0002736	77.34	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	76.42	silver quality
cardiac atrium	UBERON:0002081	76.40	gold quality
pons	UBERON:0000988	76.33	gold quality
amygdala	UBERON:0001876	76.31	gold quality
sperm	CL:0000019	76.20	gold quality
nasal cavity epithelium	UBERON:0005384	76.20	gold quality
pharyngeal mucosa	UBERON:0000355	76.07	gold quality
heart right ventricle	UBERON:0002080	75.84	silver quality
cardiac ventricle	UBERON:0002082	75.82	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.77

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.