LINC02729

Summary

LINC02729 (long intergenic non-protein coding RNA 2729, HGNC:54246) is a long non-coding RNA gene on chromosome 11p15.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54246
Approved symbol	LINC02729
Name	long intergenic non-protein coding RNA 2729
Location	11p15.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000255335
Ensembl biotype	lncRNA
Entrez	102723330
RNAcentral	URS00008E39AE — lncRNA, 565 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 11 — 11 lncRNA

ENST00000529781, ENST00000658252, ENST00000667234, ENST00000670639, ENST00000849122, ENST00000849123, ENST00000849124, ENST00000849125, ENST00000849126, ENST00000849127, ENST00000849128

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000529781 — 2 exons

Exon	Start	End
ENSE00002149906	17696819	17696940
ENSE00002160259	17695267	17695700

Expression profiles

Bgee: expression breadth broad, 75 present calls, max score 93.38.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0087 / max 9.0217, expressed in 3 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
118874	0.0087	3

Top tissues by expression

75 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	93.38	gold quality
left testis	UBERON:0004533	80.83	gold quality
right testis	UBERON:0004534	80.51	gold quality
testis	UBERON:0000473	80.21	gold quality
hindlimb stylopod muscle	UBERON:0004252	67.23	gold quality
skeletal muscle tissue	UBERON:0001134	57.90	gold quality
multicellular organism	UBERON:0000468	56.91	gold quality
muscle of leg	UBERON:0001383	56.27	gold quality
gastrocnemius	UBERON:0001388	56.00	gold quality
blood	UBERON:0000178	54.46	gold quality
monocyte	CL:0000576	54.21	gold quality
primary visual cortex	UBERON:0002436	50.87	silver quality
prefrontal cortex	UBERON:0000451	49.71	gold quality
pancreas	UBERON:0001264	48.12	gold quality
corpus callosum	UBERON:0002336	48.08	silver quality
cortex of kidney	UBERON:0001225	47.69	silver quality
Brodmann (1909) area 9	UBERON:0013540	46.32	gold quality
pituitary gland	UBERON:0000007	45.70	gold quality
putamen	UBERON:0001874	45.42	gold quality
tibial artery	UBERON:0007610	44.67	silver quality
body of pancreas	UBERON:0001150	44.30	silver quality
adenohypophysis	UBERON:0002196	43.74	gold quality
brain	UBERON:0000955	43.50	gold quality
prostate gland	UBERON:0002367	43.30	gold quality
right hemisphere of cerebellum	UBERON:0014890	43.26	silver quality
skin of abdomen	UBERON:0001416	43.14	silver quality
cerebellar cortex	UBERON:0002129	43.11	silver quality
minor salivary gland	UBERON:0001830	43.09	gold quality
lower esophagus muscularis layer	UBERON:0035833	42.70	gold quality
cerebellar hemisphere	UBERON:0002245	42.69	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.23

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.