LINC02733

Summary

LINC02733 (long intergenic non-protein coding RNA 2733, HGNC:54250) is a long non-coding RNA gene on chromosome 11q12.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54250
Approved symbol	LINC02733
Name	long intergenic non-protein coding RNA 2733
Location	11q12.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000255553
Ensembl biotype	lncRNA
Entrez	100507521
RNAcentral	URS00026A278C — lncRNA, 3299 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 8 — 8 lncRNA

ENST00000524942, ENST00000649903, ENST00000658933, ENST00000801160, ENST00000801161, ENST00000801162, ENST00000801369, ENST00000801370

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000524942 — 2 exons

Exon	Start	End
ENSE00002148273	62081614	62082184
ENSE00002156234	62077277	62077493

Expression profiles

Bgee: expression breadth ubiquitous, 128 present calls, max score 86.41.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0105 / max 11.8285, expressed in 1 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
120090	0.0056	1
120089	0.0050	1

Top tissues by expression

131 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
cerebellar vermis	UBERON:0004720	86.41	gold quality
quadriceps femoris	UBERON:0001377	86.37	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	77.34	gold quality
thymus	UBERON:0002370	76.90	silver quality
placenta	UBERON:0001987	68.50	gold quality
right testis	UBERON:0004534	63.65	gold quality
testis	UBERON:0000473	63.43	gold quality
left testis	UBERON:0004533	63.36	gold quality
right lung	UBERON:0002167	60.38	gold quality
lower esophagus mucosa	UBERON:0035834	60.26	gold quality
cortex of kidney	UBERON:0001225	59.90	gold quality
left lobe of thyroid gland	UBERON:0001120	59.72	gold quality
ventricular zone	UBERON:0003053	59.51	gold quality
right uterine tube	UBERON:0001302	59.35	gold quality
right lobe of thyroid gland	UBERON:0001119	59.31	gold quality
thyroid gland	UBERON:0002046	59.26	gold quality
ganglionic eminence	UBERON:0004023	59.05	gold quality
urinary bladder	UBERON:0001255	58.87	gold quality
metanephros cortex	UBERON:0010533	58.14	gold quality
cerebellar cortex	UBERON:0002129	57.87	gold quality
cerebellum	UBERON:0002037	57.83	gold quality
cerebellar hemisphere	UBERON:0002245	57.79	gold quality
kidney	UBERON:0002113	57.58	gold quality
cortical plate	UBERON:0005343	57.40	silver quality
left adrenal gland	UBERON:0001234	57.31	gold quality
left adrenal gland cortex	UBERON:0035825	57.25	gold quality
skin of abdomen	UBERON:0001416	57.16	gold quality
right hemisphere of cerebellum	UBERON:0014890	57.14	gold quality
bone marrow	UBERON:0002371	57.05	gold quality
zone of skin	UBERON:0000014	57.02	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	2.62

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.