LINC02742

Summary

LINC02742 (long intergenic non-protein coding RNA 2742, HGNC:54259) is a long non-coding RNA gene on chromosome 11p14.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54259
Approved symbol	LINC02742
Name	long intergenic non-protein coding RNA 2742
Location	11p14.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000249867
Ensembl biotype	lncRNA
Entrez	105376603
RNAcentral	URS00026A1E63 — lncRNA, 1326 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 9 — 9 lncRNA

ENST00000511073, ENST00000513853, ENST00000662190, ENST00000666135, ENST00000788052, ENST00000788053, ENST00000788054, ENST00000788055, ENST00000788056

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000511073 — 4 exons

Exon	Start	End
ENSE00002022607	29037742	29037816
ENSE00002027663	28902247	28902369
ENSE00002039112	29063289	29064322
ENSE00002061395	29059389	29059472

Expression profiles

Bgee: expression breadth ubiquitous, 105 present calls, max score 83.83.

FANTOM5 (CAGE): breadth broad, TPM avg 0.8996 / max 205.7367, expressed in 212 samples.

FANTOM5 promoters (5 alternative TSS)

Promoter ID	TPM avg	Samples expressed
113563	0.6389	176
113564	0.1881	64
113561	0.0431	19
113560	0.0197	13
113562	0.0098	4

Top tissues by expression

105 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	83.83	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.93	gold quality
sural nerve	UBERON:0015488	66.81	silver quality
right lobe of thyroid gland	UBERON:0001119	60.60	gold quality
stromal cell of endometrium	CL:0002255	59.89	gold quality
left lobe of thyroid gland	UBERON:0001120	59.34	gold quality
thyroid gland	UBERON:0002046	58.25	gold quality
bone marrow	UBERON:0002371	56.69	gold quality
leukocyte	CL:0000738	53.59	gold quality
monocyte	CL:0000576	53.06	gold quality
blood	UBERON:0000178	52.77	gold quality
testis	UBERON:0000473	52.13	gold quality
endometrium	UBERON:0001295	51.22	gold quality
corpus callosum	UBERON:0002336	50.68	silver quality
body of pancreas	UBERON:0001150	50.61	gold quality
pancreas	UBERON:0001264	50.61	gold quality
right testis	UBERON:0004534	50.33	gold quality
adrenal tissue	UBERON:0018303	50.22	gold quality
hindlimb stylopod muscle	UBERON:0004252	50.11	gold quality
liver	UBERON:0002107	49.62	silver quality
calcaneal tendon	UBERON:0003701	49.55	silver quality
islet of Langerhans	UBERON:0000006	49.48	gold quality
lymph node	UBERON:0000029	49.46	silver quality
left testis	UBERON:0004533	49.38	gold quality
prefrontal cortex	UBERON:0000451	49.01	gold quality
superior frontal gyrus	UBERON:0002661	48.85	gold quality
myometrium	UBERON:0001296	47.38	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	47.37	gold quality
muscle of leg	UBERON:0001383	46.84	silver quality
multicellular organism	UBERON:0000468	46.59	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.07

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.