LINC02744

Summary

LINC02744 (long intergenic non-protein coding RNA 2744, HGNC:54262) is a long non-coding RNA gene on chromosome 11q23.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54262
Approved symbol	LINC02744
Name	long intergenic non-protein coding RNA 2744
Location	11q23.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000254863
Ensembl biotype	lncRNA
Entrez	105369528
RNAcentral	URS00026A1CD5 — lncRNA, 879 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 21 — 21 lncRNA

ENST00000524708, ENST00000526934, ENST00000534055, ENST00000662076, ENST00000759041, ENST00000759042, ENST00000759043, ENST00000759044, ENST00000759045, ENST00000759046, ENST00000759047, ENST00000759048, ENST00000759049, ENST00000759050, ENST00000759051, ENST00000759052, ENST00000759053, ENST00000759054, ENST00000759055, ENST00000759056, ENST00000759057

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000524708 — 3 exons

Exon	Start	End
ENSE00002155375	119988764	119988901
ENSE00002163786	119989281	119989456
ENSE00002172982	119994888	119995037

Expression profiles

Bgee: expression breadth broad, 81 present calls, max score 94.33.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0126 / max 10.3750, expressed in 4 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
122755	0.0126	4

Top tissues by expression

81 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	94.33	gold quality
right testis	UBERON:0004534	76.65	gold quality
left testis	UBERON:0004533	76.18	gold quality
testis	UBERON:0000473	75.48	gold quality
corpus callosum	UBERON:0002336	73.48	gold quality
lower esophagus mucosa	UBERON:0035834	61.23	gold quality
cortex of kidney	UBERON:0001225	57.52	gold quality
monocyte	CL:0000576	57.29	gold quality
prefrontal cortex	UBERON:0000451	55.88	gold quality
lymph node	UBERON:0000029	52.93	gold quality
multicellular organism	UBERON:0000468	50.85	gold quality
blood	UBERON:0000178	50.77	silver quality
C1 segment of cervical spinal cord	UBERON:0006469	49.81	gold quality
frontal cortex	UBERON:0001870	49.60	gold quality
primary visual cortex	UBERON:0002436	48.34	gold quality
body of pancreas	UBERON:0001150	47.87	silver quality
substantia nigra	UBERON:0002038	47.53	gold quality
skin of abdomen	UBERON:0001416	47.25	gold quality
Brodmann (1909) area 9	UBERON:0013540	47.24	gold quality
tibial artery	UBERON:0007610	47.15	gold quality
amygdala	UBERON:0001876	47.08	gold quality
right atrium auricular region	UBERON:0006631	46.82	gold quality
lung	UBERON:0002048	46.54	silver quality
cerebral cortex	UBERON:0000956	46.51	gold quality
kidney	UBERON:0002113	46.46	gold quality
gastrocnemius	UBERON:0001388	46.14	gold quality
islet of Langerhans	UBERON:0000006	46.07	silver quality
urinary bladder	UBERON:0001255	46.04	silver quality
superior frontal gyrus	UBERON:0002661	45.71	silver quality
brain	UBERON:0000955	45.65	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.29

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.