LINC02747

Summary

LINC02747 (long intergenic non-protein coding RNA 2747, HGNC:54266) is a long non-coding RNA gene on chromosome 11q13.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54266
Approved symbol	LINC02747
Name	long intergenic non-protein coding RNA 2747
Location	11q13.3
Locus type	RNA, long non-coding
Status	Approved
Aliases	AP000439.3, CUPID2, AP000439.2
Ensembl gene	ENSG00000255774
Ensembl biotype	lncRNA
OMIM	617697
Entrez	105379407
RNAcentral	URS00026A1E11 — lncRNA, 2272 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 7 — 7 lncRNA

ENST00000542064, ENST00000645449, ENST00000717992, ENST00000717993, ENST00000717994, ENST00000717995, ENST00000803309

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000542064 — 2 exons

Exon	Start	End
ENSE00004193619	69479696	69479957
ENSE00004193620	69475604	69477613

Expression profiles

Bgee: expression breadth broad, 75 present calls, max score 87.00.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.6101 / max 19.7698, expressed in 111 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
121042	0.4209	110
121043	0.1892	89

Top tissues by expression

75 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
mucosa of transverse colon	UBERON:0004991	87.00	gold quality
duodenum	UBERON:0002114	82.82	gold quality
transverse colon	UBERON:0001157	79.17	gold quality
rectum	UBERON:0001052	77.95	gold quality
colon	UBERON:0001155	74.24	gold quality
intestine	UBERON:0000160	73.70	gold quality
small intestine	UBERON:0002108	72.86	gold quality
small intestine Peyer’s patch	UBERON:0003454	71.32	gold quality
skin of leg	UBERON:0001511	67.54	gold quality
zone of skin	UBERON:0000014	67.34	gold quality
skin of abdomen	UBERON:0001416	66.60	gold quality
colonic epithelium	UBERON:0000397	66.47	silver quality
lower esophagus mucosa	UBERON:0035834	66.29	gold quality
vermiform appendix	UBERON:0001154	62.03	gold quality
multicellular organism	UBERON:0000468	61.82	gold quality
esophagus mucosa	UBERON:0002469	60.08	gold quality
esophagus	UBERON:0001043	59.34	gold quality
cortex of kidney	UBERON:0001225	59.23	gold quality
islet of Langerhans	UBERON:0000006	58.37	gold quality
muscle layer of sigmoid colon	UBERON:0035805	57.44	gold quality
pancreas	UBERON:0001264	56.77	gold quality
liver	UBERON:0002107	56.57	gold quality
myometrium	UBERON:0001296	56.26	gold quality
tonsil	UBERON:0002372	55.48	gold quality
urinary bladder	UBERON:0001255	55.25	gold quality
ectocervix	UBERON:0012249	54.83	gold quality
prefrontal cortex	UBERON:0000451	54.57	gold quality
gall bladder	UBERON:0002110	54.21	gold quality
smooth muscle tissue	UBERON:0001135	53.74	gold quality
vagina	UBERON:0000996	53.21	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.95

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.