LINC02772

Summary

LINC02772 (long intergenic non-protein coding RNA 2772, HGNC:54292) is a long non-coding RNA gene on chromosome 1q23.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54292
Approved symbol	LINC02772
Name	long intergenic non-protein coding RNA 2772
Location	1q23.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000271736
Ensembl biotype	lncRNA
Entrez	105371455
RNAcentral	URS00026A1F86 — lncRNA, 2974 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 7 — 7 lncRNA

ENST00000607010, ENST00000662441, ENST00000662968, ENST00000670336, ENST00000727528, ENST00000727529, ENST00000727530

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000607010 — 2 exons

Exon	Start	End
ENSE00003694786	157280716	157280853
ENSE00003702033	157282578	157283068

Expression profiles

Bgee: expression breadth broad, 100 present calls, max score 83.10.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.4069 / max 114.3482, expressed in 66 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
5804	0.2035	34
5803	0.1359	42
5805	0.0676	18

Top tissues by expression

103 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
bone marrow	UBERON:0002371	83.10	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	82.22	gold quality
bone marrow cell	CL:0002092	78.36	gold quality
blood	UBERON:0000178	74.92	gold quality
monocyte	CL:0000576	71.73	gold quality
quadriceps femoris	UBERON:0001377	64.14	gold quality
cerebellar vermis	UBERON:0004720	63.05	gold quality
lymph node	UBERON:0000029	62.38	gold quality
upper lobe of left lung	UBERON:0008952	60.90	gold quality
endometrium	UBERON:0001295	60.07	gold quality
lung	UBERON:0002048	59.76	gold quality
ganglionic eminence	UBERON:0004023	59.58	gold quality
cortical plate	UBERON:0005343	58.29	silver quality
skeletal muscle tissue	UBERON:0001134	58.21	gold quality
thymus	UBERON:0002370	57.78	silver quality
placenta	UBERON:0001987	57.50	gold quality
spleen	UBERON:0002106	57.22	gold quality
liver	UBERON:0002107	56.26	gold quality
multicellular organism	UBERON:0000468	55.60	gold quality
right testis	UBERON:0004534	55.57	gold quality
right ovary	UBERON:0002118	55.16	gold quality
right lobe of liver	UBERON:0001114	54.93	gold quality
body of pancreas	UBERON:0001150	54.47	gold quality
pancreas	UBERON:0001264	54.47	gold quality
muscle tissue	UBERON:0002385	53.76	gold quality
adenohypophysis	UBERON:0002196	53.74	gold quality
testis	UBERON:0000473	53.46	gold quality
left testis	UBERON:0004533	53.29	gold quality
saliva-secreting gland	UBERON:0001044	52.00	gold quality
prefrontal cortex	UBERON:0000451	51.92	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.63

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.