LINC02780

Summary

LINC02780 (long intergenic non-protein coding RNA 2780, HGNC:54300) is a long non-coding RNA gene on chromosome 1p36.32.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54300
Approved symbol	LINC02780
Name	long intergenic non-protein coding RNA 2780
Location	1p36.32
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000284668
Ensembl biotype	lncRNA
Entrez	105376673
RNAcentral	URS00026A233D — lncRNA, 2548 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 13 — 13 lncRNA

ENST00000641078, ENST00000641562, ENST00000642026, ENST00000742912, ENST00000742913, ENST00000742914, ENST00000742915, ENST00000742916, ENST00000742917, ENST00000742918, ENST00000742919, ENST00000742920, ENST00000742921

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000641078 — 4 exons

Exon	Start	End
ENSE00003812029	3976882	3977157
ENSE00003812915	3996807	3996932
ENSE00004080841	3976139	3976195
ENSE00004080843	3998056	3998855

Expression profiles

Bgee: expression breadth ubiquitous, 105 present calls, max score 81.70.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.2070 / max 31.8841, expressed in 58 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
332	0.2070	58

Top tissues by expression

105 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.70	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	74.65	gold quality
right testis	UBERON:0004534	65.79	gold quality
testis	UBERON:0000473	64.88	gold quality
left testis	UBERON:0004533	64.29	gold quality
ganglionic eminence	UBERON:0004023	62.16	gold quality
hindlimb stylopod muscle	UBERON:0004252	60.14	gold quality
skeletal muscle tissue	UBERON:0001134	55.98	gold quality
monocyte	CL:0000576	55.91	gold quality
bone marrow	UBERON:0002371	55.23	gold quality
calcaneal tendon	UBERON:0003701	54.01	silver quality
lymph node	UBERON:0000029	52.57	gold quality
prefrontal cortex	UBERON:0000451	52.46	gold quality
blood	UBERON:0000178	51.78	gold quality
superior frontal gyrus	UBERON:0002661	50.97	gold quality
endometrium	UBERON:0001295	50.88	gold quality
islet of Langerhans	UBERON:0000006	49.98	gold quality
muscle of leg	UBERON:0001383	49.54	gold quality
liver	UBERON:0002107	48.75	silver quality
gastrocnemius	UBERON:0001388	48.18	gold quality
vermiform appendix	UBERON:0001154	48.12	gold quality
right lobe of liver	UBERON:0001114	48.10	silver quality
myometrium	UBERON:0001296	47.84	gold quality
frontal cortex	UBERON:0001870	47.31	gold quality
placenta	UBERON:0001987	47.15	silver quality
duodenum	UBERON:0002114	46.72	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	46.68	silver quality
multicellular organism	UBERON:0000468	46.36	gold quality
gall bladder	UBERON:0002110	46.24	gold quality
body of pancreas	UBERON:0001150	45.57	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.13

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.