LINC02788

Summary

LINC02788 (long intergenic non-protein coding RNA 2788, HGNC:54309) is a long non-coding RNA gene on chromosome 1p22.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54309
Approved symbol	LINC02788
Name	long intergenic non-protein coding RNA 2788
Location	1p22.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000285532
Ensembl biotype	lncRNA
Entrez	105378855
RNAcentral	URS00026A1E5E — lncRNA, 953 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000650406, ENST00000662449

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000650406 — 4 exons

Exon	Start	End
ENSE00003832569	90841587	90841644
ENSE00003833486	90848056	90848121
ENSE00003837505	90848989	90849472
ENSE00003840499	90845654	90845799

Expression profiles

Bgee: expression breadth ubiquitous, 105 present calls, max score 84.44.

Top tissues by expression

105 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	84.44	silver quality
colonic epithelium	UBERON:0000397	63.32	silver quality
liver	UBERON:0002107	57.14	gold quality
corpus callosum	UBERON:0002336	56.82	gold quality
endometrium	UBERON:0001295	54.00	gold quality
monocyte	CL:0000576	53.73	gold quality
calcaneal tendon	UBERON:0003701	53.70	silver quality
tonsil	UBERON:0002372	51.58	silver quality
bone marrow	UBERON:0002371	51.46	silver quality
placenta	UBERON:0001987	51.45	gold quality
islet of Langerhans	UBERON:0000006	50.54	gold quality
adrenal tissue	UBERON:0018303	49.72	silver quality
right lobe of liver	UBERON:0001114	49.49	gold quality
prefrontal cortex	UBERON:0000451	48.48	gold quality
testis	UBERON:0000473	48.31	gold quality
hindlimb stylopod muscle	UBERON:0004252	48.11	silver quality
left testis	UBERON:0004533	48.10	gold quality
ovary	UBERON:0000992	47.94	gold quality
right hemisphere of cerebellum	UBERON:0014890	47.71	silver quality
cerebellar cortex	UBERON:0002129	47.70	silver quality
cerebellum	UBERON:0002037	47.66	silver quality
blood	UBERON:0000178	47.53	silver quality
myometrium	UBERON:0001296	47.49	gold quality
cerebellar hemisphere	UBERON:0002245	47.48	silver quality
body of pancreas	UBERON:0001150	47.33	gold quality
left ovary	UBERON:0002119	47.28	gold quality
urinary bladder	UBERON:0001255	46.85	gold quality
right testis	UBERON:0004534	46.52	gold quality
muscle of leg	UBERON:0001383	46.51	silver quality
right ovary	UBERON:0002118	46.37	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.13

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.