LINC02790

Summary

LINC02790 (long intergenic non-protein coding RNA 2790, HGNC:54313) is a long non-coding RNA gene on chromosome 1p21.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54313
Approved symbol	LINC02790
Name	long intergenic non-protein coding RNA 2790
Location	1p21.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000237435
Ensembl biotype	lncRNA
Entrez	102723661
RNAcentral	URS00007E49B3 — lncRNA, 813 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 27 — 27 lncRNA

ENST00000412513, ENST00000413825, ENST00000442558, ENST00000451675, ENST00000593954, ENST00000595188, ENST00000595613, ENST00000598129, ENST00000598612, ENST00000609411, ENST00000623085, ENST00000623349, ENST00000623830, ENST00000624750, ENST00000625774, ENST00000627733, ENST00000631091, ENST00000634962, ENST00000654486, ENST00000655418, ENST00000659691, ENST00000660327, ENST00000662075, ENST00000667522, ENST00000668462, ENST00000671269, ENST00000766256

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000412513 — 5 exons

Exon	Start	End
ENSE00001799126	95992403	95992509
ENSE00003711168	96006197	96006421
ENSE00003743721	95996121	95996194
ENSE00003877077	95992048	95992238
ENSE00004124831	96022533	96022887

Expression profiles

Bgee: expression breadth broad, 86 present calls, max score 93.85.

Top tissues by expression

204 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sperm	CL:0000019	93.85	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	88.22	gold quality
left testis	UBERON:0004533	86.50	gold quality
right testis	UBERON:0004534	84.92	gold quality
testis	UBERON:0000473	83.66	gold quality
tibialis anterior	UBERON:0001385	80.58	silver quality
pancreatic ductal cell	CL:0002079	72.08	silver quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	71.21	gold quality
ileal mucosa	UBERON:0000331	68.66	silver quality
islet of Langerhans	UBERON:0000006	67.73	gold quality
cardiac muscle of right atrium	UBERON:0003379	67.17	gold quality
left ventricle myocardium	UBERON:0006566	66.85	gold quality
sural nerve	UBERON:0015488	66.56	silver quality
adult organism	UBERON:0007023	64.26	gold quality
myocardium	UBERON:0002349	64.19	gold quality
deltoid	UBERON:0001476	63.11	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	62.68	gold quality
quadriceps femoris	UBERON:0001377	62.25	gold quality
descending thoracic aorta	UBERON:0002345	61.77	gold quality
vastus lateralis	UBERON:0001379	61.24	gold quality
secondary oocyte	CL:0000655	59.47	gold quality
oocyte	CL:0000023	58.53	gold quality
gingival epithelium	UBERON:0001949	57.32	gold quality
prefrontal cortex	UBERON:0000451	56.60	gold quality
epithelial cell of pancreas	CL:0000083	56.12	gold quality
upper leg skin	UBERON:0004262	56.00	silver quality
monocyte	CL:0000576	55.68	gold quality
lower lobe of lung	UBERON:0008949	55.03	silver quality
superficial temporal artery	UBERON:0001614	54.38	gold quality
gastrocnemius	UBERON:0001388	54.25	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.38

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.