LINC02793

Summary

LINC02793 (long intergenic non-protein coding RNA 2793, HGNC:54317) is a long non-coding RNA gene on chromosome 1p36.11.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54317
Approved symbol	LINC02793
Name	long intergenic non-protein coding RNA 2793
Location	1p36.11
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000285823
Ensembl biotype	lncRNA
Entrez	105376879
RNAcentral	URS0000DB7607 — lncRNA, 1108 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000648363, ENST00000648660

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000648363 — 3 exons

Exon	Start	End
ENSE00003832552	25041136	25041378
ENSE00003835435	25046730	25047404
ENSE00003837092	25043713	25043902

Expression profiles

Bgee: expression breadth broad, 51 present calls, max score 93.60.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0117 / max 7.7308, expressed in 4 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
1489	0.0117	4

Top tissues by expression

60 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
caudate nucleus	UBERON:0001873	93.60	gold quality
cerebellar vermis	UBERON:0004720	92.78	gold quality
anterior cingulate cortex	UBERON:0009835	92.78	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	83.40	silver quality
skeletal muscle tissue	UBERON:0001134	72.96	silver quality
liver	UBERON:0002107	72.70	silver quality
kidney	UBERON:0002113	69.06	silver quality
prostate gland	UBERON:0002367	69.00	gold quality
spinal cord	UBERON:0002240	68.39	silver quality
thymus	UBERON:0002370	65.63	silver quality
right testis	UBERON:0004534	58.42	gold quality
left testis	UBERON:0004533	57.87	gold quality
testis	UBERON:0000473	57.72	gold quality
subcutaneous adipose tissue	UBERON:0002190	54.05	silver quality
urinary bladder	UBERON:0001255	53.43	gold quality
blood	UBERON:0000178	52.73	gold quality
monocyte	CL:0000576	50.59	silver quality
granulocyte	CL:0000094	50.41	silver quality
lymph node	UBERON:0000029	48.71	gold quality
tonsil	UBERON:0002372	48.46	gold quality
smooth muscle tissue	UBERON:0001135	48.16	gold quality
muscle of leg	UBERON:0001383	47.92	gold quality
gall bladder	UBERON:0002110	47.69	gold quality
body of pancreas	UBERON:0001150	47.56	gold quality
pancreas	UBERON:0001264	46.57	silver quality
islet of Langerhans	UBERON:0000006	45.51	silver quality
heart left ventricle	UBERON:0002084	45.02	gold quality
heart	UBERON:0000948	44.74	gold quality
Ammon’s horn	UBERON:0001954	44.57	silver quality
primary visual cortex	UBERON:0002436	44.26	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.47

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.