LINC02798

Summary

LINC02798 (long intergenic non-protein coding RNA 2798, HGNC:54323) is a long non-coding RNA gene on chromosome 1p11.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54323
Approved symbol	LINC02798
Name	long intergenic non-protein coding RNA 2798
Location	1p11.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000227082
Ensembl biotype	lncRNA
Entrez	107985194
RNAcentral	URS0002A392B5 — lncRNA, 4176 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 8 — 8 lncRNA

ENST00000417218, ENST00000445260, ENST00000650414, ENST00000664311, ENST00000668551, ENST00000670866, ENST00000757145, ENST00000757146

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000417218 — 2 exons

Exon	Start	End
ENSE00004107937	121460019	121463129
ENSE00004107938	121396240	121397304

Expression profiles

Bgee: expression breadth ubiquitous, 162 present calls, max score 75.95.

Top tissues by expression

234 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	75.95	gold quality
cerebellar hemisphere	UBERON:0002245	72.40	gold quality
cerebellar cortex	UBERON:0002129	72.33	gold quality
right hemisphere of cerebellum	UBERON:0014890	71.89	gold quality
sural nerve	UBERON:0015488	71.74	gold quality
cerebellum	UBERON:0002037	71.28	gold quality
buccal mucosa cell	CL:0002336	70.89	silver quality
cortical plate	UBERON:0005343	70.11	gold quality
prefrontal cortex	UBERON:0000451	69.04	gold quality
right atrium auricular region	UBERON:0006631	67.72	gold quality
cardiac atrium	UBERON:0002081	67.02	gold quality
Brodmann (1909) area 9	UBERON:0013540	66.69	gold quality
colonic epithelium	UBERON:0000397	66.66	silver quality
C1 segment of cervical spinal cord	UBERON:0006469	66.01	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	65.70	gold quality
anterior cingulate cortex	UBERON:0009835	65.36	gold quality
neocortex	UBERON:0001950	64.81	gold quality
frontal cortex	UBERON:0001870	64.62	gold quality
right frontal lobe	UBERON:0002810	64.16	gold quality
primary visual cortex	UBERON:0002436	63.94	gold quality
caudate nucleus	UBERON:0001873	63.78	gold quality
spinal cord	UBERON:0002240	63.68	gold quality
cerebral cortex	UBERON:0000956	63.40	gold quality
substantia nigra	UBERON:0002038	63.34	gold quality
Ammon’s horn	UBERON:0001954	61.96	gold quality
putamen	UBERON:0001874	61.91	gold quality
brain	UBERON:0000955	61.67	gold quality
islet of Langerhans	UBERON:0000006	61.62	gold quality
hypothalamus	UBERON:0001898	61.51	gold quality
ventricular zone	UBERON:0003053	61.42	gold quality

Single-cell (SCXA)

Detected in 2 experiment(s), a significant marker in 2.

Experiment	Marker?	Max mean expression
E-HCAD-35	yes	12.23
E-ANND-3	yes	5.05

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.