LINC02799

Summary

LINC02799 (long intergenic non-protein coding RNA 2799, HGNC:54324) is a long non-coding RNA gene on chromosome 1q21.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54324
Approved symbol	LINC02799
Name	long intergenic non-protein coding RNA 2799
Location	1q21.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000235887
Ensembl biotype	lncRNA
Entrez	112268275
RNAcentral	URS0000772A7C — lncRNA, 408 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000456469

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000456469 — 3 exons

Exon	Start	End
ENSE00001612977	143500371	143500512
ENSE00001782581	143499187	143499375
ENSE00001793090	143499472	143499548

Expression profiles

Bgee: expression breadth ubiquitous, 107 present calls, max score 82.96.

Top tissues by expression

107 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	82.96	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	74.20	gold quality
ganglionic eminence	UBERON:0004023	71.16	gold quality
ventricular zone	UBERON:0003053	69.09	gold quality
monocyte	CL:0000576	67.75	gold quality
sural nerve	UBERON:0015488	66.97	gold quality
bone marrow cell	CL:0002092	65.23	silver quality
hindlimb stylopod muscle	UBERON:0004252	61.95	gold quality
skeletal muscle tissue	UBERON:0001134	61.80	gold quality
liver	UBERON:0002107	60.17	gold quality
prefrontal cortex	UBERON:0000451	57.58	gold quality
lymph node	UBERON:0000029	57.28	gold quality
islet of Langerhans	UBERON:0000006	57.24	gold quality
superior frontal gyrus	UBERON:0002661	56.97	gold quality
muscle of leg	UBERON:0001383	56.91	gold quality
gastrocnemius	UBERON:0001388	56.32	gold quality
vermiform appendix	UBERON:0001154	56.20	gold quality
primary visual cortex	UBERON:0002436	55.16	gold quality
popliteal artery	UBERON:0002250	55.11	gold quality
tibial artery	UBERON:0007610	55.00	gold quality
gall bladder	UBERON:0002110	54.51	gold quality
tibial nerve	UBERON:0001323	54.26	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	54.03	gold quality
ascending aorta	UBERON:0001496	53.49	gold quality
blood	UBERON:0000178	53.30	gold quality
thoracic aorta	UBERON:0001515	53.16	gold quality
body of pancreas	UBERON:0001150	53.05	gold quality
placenta	UBERON:0001987	52.56	gold quality
left adrenal gland cortex	UBERON:0035825	52.43	gold quality
cortex of kidney	UBERON:0001225	52.29	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.42

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.