LINC02800

Summary

LINC02800 (long intergenic non-protein coding RNA 2800, HGNC:27642) is a long non-coding RNA gene on chromosome 1p36.11.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:27642
Approved symbol	LINC02800
Name	long intergenic non-protein coding RNA 2800
Location	1p36.11
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000230023
Ensembl biotype	lncRNA
Entrez	284632
RNAcentral	URS0000759DFB — lncRNA, 1863 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 4 lncRNA

ENST00000439059, ENST00000805331, ENST00000805332, ENST00000805333

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000439059 — 3 exons

Exon	Start	End
ENSE00001607170	24210133	24211693
ENSE00001658068	24202464	24202599
ENSE00001692238	24200240	24200391

Expression profiles

Bgee: expression breadth broad, 43 present calls, max score 72.72.

Top tissues by expression

166 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	72.72	gold quality
right hemisphere of cerebellum	UBERON:0014890	61.28	gold quality
cerebellar hemisphere	UBERON:0002245	61.21	gold quality
cerebellar cortex	UBERON:0002129	60.98	gold quality
cerebellum	UBERON:0002037	59.50	gold quality
upper leg skin	UBERON:0004262	53.24	gold quality
oocyte	CL:0000023	51.98	gold quality
sperm	CL:0000019	51.01	gold quality
right frontal lobe	UBERON:0002810	50.13	gold quality
Brodmann (1909) area 9	UBERON:0013540	48.52	gold quality
islet of Langerhans	UBERON:0000006	47.88	silver quality
tibial nerve	UBERON:0001323	46.97	gold quality
brain	UBERON:0000955	45.67	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	44.94	silver quality
gastrocnemius	UBERON:0001388	44.92	silver quality
lower esophagus mucosa	UBERON:0035834	44.31	silver quality
transverse colon	UBERON:0001157	44.11	silver quality
mucosa of transverse colon	UBERON:0004991	44.03	silver quality
upper lobe of left lung	UBERON:0008952	43.61	silver quality
small intestine Peyer’s patch	UBERON:0003454	43.48	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	43.37	gold quality
esophagus mucosa	UBERON:0002469	42.62	silver quality
secondary oocyte	CL:0000655	42.57	gold quality
adrenal gland	UBERON:0002369	42.45	silver quality
esophagus	UBERON:0001043	42.39	silver quality
skin of leg	UBERON:0001511	42.10	gold quality
blood	UBERON:0000178	42.04	gold quality
heart left ventricle	UBERON:0002084	41.97	gold quality
colon	UBERON:0001155	41.94	silver quality
skin of hip	UBERON:0001554	41.91	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.31

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.