LINC02801

Summary

LINC02801 (long intergenic non-protein coding RNA 2801, HGNC:54325) is a long non-coding RNA gene on chromosome 1p22.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54325
Approved symbol	LINC02801
Name	long intergenic non-protein coding RNA 2801
Location	1p22.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000284240
Ensembl biotype	lncRNA
Entrez	101927844
RNAcentral	URS0000AA9A9B — lncRNA, 1152 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 43 — 43 lncRNA

ENST00000640362, ENST00000640491, ENST00000640794, ENST00000769128, ENST00000769129, ENST00000769130, ENST00000769131, ENST00000769132, ENST00000769133, ENST00000769134, ENST00000769135, ENST00000769136, ENST00000769137, ENST00000769138, ENST00000769139, ENST00000769140, ENST00000769141, ENST00000769142, ENST00000769143, ENST00000769144, ENST00000769145, ENST00000769146, ENST00000769147, ENST00000769148, ENST00000769149, ENST00000769150, ENST00000769151, ENST00000769152, ENST00000769153, ENST00000769154, ENST00000769155, ENST00000769156, ENST00000769157, ENST00000769158, ENST00000769159, ENST00000769160, ENST00000769161, ENST00000769162, ENST00000769163, ENST00000769164, ENST00000769165, ENST00000769166, ENST00000769167

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000640362 — 4 exons

Exon	Start	End
ENSE00003803589	87261208	87264741
ENSE00003803690	87220183	87220344
ENSE00003805031	87216933	87217000
ENSE00003806952	87212705	87212804

Expression profiles

Bgee: expression breadth ubiquitous, 107 present calls, max score 78.63.

Top tissues by expression

107 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	78.63	silver quality
bone marrow cell	CL:0002092	69.75	silver quality
liver	UBERON:0002107	61.93	gold quality
skeletal muscle tissue	UBERON:0001134	61.72	silver quality
ventricular zone	UBERON:0003053	60.37	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	60.20	gold quality
duodenum	UBERON:0002114	57.40	gold quality
vermiform appendix	UBERON:0001154	57.17	gold quality
prefrontal cortex	UBERON:0000451	56.68	gold quality
hindlimb stylopod muscle	UBERON:0004252	56.51	silver quality
ganglionic eminence	UBERON:0004023	56.18	gold quality
urinary bladder	UBERON:0001255	55.71	gold quality
calcaneal tendon	UBERON:0003701	53.55	gold quality
right hemisphere of cerebellum	UBERON:0014890	52.35	gold quality
placenta	UBERON:0001987	52.33	gold quality
monocyte	CL:0000576	52.31	gold quality
primary visual cortex	UBERON:0002436	52.25	gold quality
lymph node	UBERON:0000029	52.17	gold quality
frontal cortex	UBERON:0001870	51.89	gold quality
blood	UBERON:0000178	51.75	silver quality
superior frontal gyrus	UBERON:0002661	50.12	gold quality
cerebellar hemisphere	UBERON:0002245	49.93	gold quality
cerebellar cortex	UBERON:0002129	49.45	gold quality
cerebral cortex	UBERON:0000956	49.27	gold quality
pancreas	UBERON:0001264	48.77	gold quality
islet of Langerhans	UBERON:0000006	48.74	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	48.43	gold quality
endometrium	UBERON:0001295	48.41	gold quality
muscle of leg	UBERON:0001383	48.36	silver quality
Brodmann (1909) area 9	UBERON:0013540	48.11	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.56

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.