LINC02805

Summary

LINC02805 (long intergenic non-protein coding RNA 2805, HGNC:54339) is a long non-coding RNA gene on chromosome 1q21.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54339
Approved symbol	LINC02805
Name	long intergenic non-protein coding RNA 2805
Location	1q21.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000232265
Ensembl biotype	lncRNA
Entrez	100505824
RNAcentral	URS0000A767CE — lncRNA, 561 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 24 — 24 lncRNA

ENST00000411978, ENST00000432038, ENST00000594189, ENST00000594699, ENST00000595367, ENST00000595668, ENST00000597931, ENST00000599864, ENST00000608244, ENST00000618809, ENST00000653344, ENST00000656778, ENST00000657111, ENST00000659506, ENST00000663602, ENST00000663701, ENST00000663793, ENST00000663831, ENST00000665006, ENST00000668803, ENST00000762065, ENST00000762066, ENST00000762067, ENST00000762068

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000411978 — 2 exons

Exon	Start	End
ENSE00004116864	148162641	148162992
ENSE00004116878	148163142	148163428

Expression profiles

Bgee: expression breadth ubiquitous, 158 present calls, max score 97.34.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0469 / max 41.0487, expressed in 9 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
201691	0.0345	3
201690	0.0124	6

Top tissues by expression

253 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sperm	CL:0000019	97.34	gold quality
left testis	UBERON:0004533	94.77	gold quality
right testis	UBERON:0004534	94.74	gold quality
testis	UBERON:0000473	91.21	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	87.69	gold quality
buccal mucosa cell	CL:0002336	79.78	gold quality
kidney epithelium	UBERON:0004819	78.29	gold quality
adult organism	UBERON:0007023	76.84	gold quality
cardiac muscle of right atrium	UBERON:0003379	76.21	gold quality
left ventricle myocardium	UBERON:0006566	75.86	gold quality
right hemisphere of cerebellum	UBERON:0014890	75.54	gold quality
cerebellar hemisphere	UBERON:0002245	75.17	gold quality
cerebellar cortex	UBERON:0002129	74.88	gold quality
upper arm skin	UBERON:0004263	74.67	gold quality
cerebellum	UBERON:0002037	72.75	gold quality
epithelial cell of pancreas	CL:0000083	70.56	gold quality
sural nerve	UBERON:0015488	69.24	gold quality
cortical plate	UBERON:0005343	68.97	gold quality
ventricular zone	UBERON:0003053	68.90	gold quality
cerebellar vermis	UBERON:0004720	66.74	gold quality
nasal cavity epithelium	UBERON:0005384	66.24	gold quality
bone marrow cell	CL:0002092	64.05	silver quality
ganglionic eminence	UBERON:0004023	63.47	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	63.36	gold quality
lower esophagus mucosa	UBERON:0035834	61.89	gold quality
myocardium	UBERON:0002349	61.87	gold quality
monocyte	CL:0000576	60.94	gold quality
right frontal lobe	UBERON:0002810	60.32	gold quality
leukocyte	CL:0000738	60.29	gold quality
lymph node	UBERON:0000029	59.58	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	2.58

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.