LINC02806

Summary

LINC02806 (long intergenic non-protein coding RNA 2806, HGNC:27628) is a long non-coding RNA gene on chromosome 1q21.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:27628
Approved symbol	LINC02806
Name	long intergenic non-protein coding RNA 2806
Location	1q21.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000238107
Ensembl biotype	lncRNA
Entrez	284561
RNAcentral	URS00026A2826 — lncRNA, 4346 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 51 — 51 lncRNA

ENST00000427169, ENST00000452996, ENST00000648583, ENST00000653053, ENST00000654570, ENST00000662680, ENST00000761522, ENST00000761523, ENST00000761524, ENST00000761525, ENST00000761526, ENST00000761527, ENST00000761528, ENST00000761529, ENST00000761530, ENST00000761531, ENST00000761532, ENST00000761533, ENST00000761534, ENST00000761535, ENST00000761536, ENST00000761537, ENST00000762377, ENST00000762378, ENST00000762379, ENST00000762380, ENST00000762381, ENST00000762382, ENST00000762383, ENST00000762384, ENST00000762385, ENST00000762386, ENST00000762387, ENST00000762388, ENST00000762389, ENST00000762390, ENST00000762391, ENST00000762392, ENST00000762393, ENST00000762394, ENST00000762395, ENST00000762396, ENST00000762397, ENST00000762398, ENST00000762399, ENST00000762400, ENST00000762401, ENST00000762402, ENST00000762403, ENST00000762404, ENST00000762405

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000427169 — 2 exons

Exon	Start	End
ENSE00001624666	148295756	148297556
ENSE00004117502	148295159	148295296

Expression profiles

Bgee: expression breadth broad, 47 present calls, max score 92.02.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1656 / max 17.0789, expressed in 81 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
201692	0.1656	81

Top tissues by expression

165 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	92.02	gold quality
upper leg skin	UBERON:0004262	58.63	gold quality
superficial temporal artery	UBERON:0001614	58.02	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	57.09	gold quality
right testis	UBERON:0004534	56.18	gold quality
hindlimb stylopod muscle	UBERON:0004252	55.46	gold quality
skin of hip	UBERON:0001554	55.43	gold quality
endothelial cell	CL:0000115	55.34	gold quality
sperm	CL:0000019	55.03	silver quality
mammary duct	UBERON:0001765	53.91	gold quality
skeletal muscle tissue of biceps brachii	UBERON:0004502	53.84	gold quality
left testis	UBERON:0004533	53.57	gold quality
germinal epithelium of ovary	UBERON:0001304	53.00	gold quality
testis	UBERON:0000473	52.79	gold quality
trabecular bone tissue	UBERON:0002483	52.43	gold quality
postcentral gyrus	UBERON:0002581	52.35	gold quality
corpus epididymis	UBERON:0004359	51.57	gold quality
heart right ventricle	UBERON:0002080	51.34	gold quality
cauda epididymis	UBERON:0004360	51.09	gold quality
islet of Langerhans	UBERON:0000006	51.03	gold quality
caput epididymis	UBERON:0004358	51.03	gold quality
placenta	UBERON:0001987	50.88	gold quality
parietal lobe	UBERON:0001872	50.22	gold quality
superior frontal gyrus	UBERON:0002661	49.91	gold quality
nasal cavity epithelium	UBERON:0005384	49.85	gold quality
muscle of leg	UBERON:0001383	49.38	gold quality
lower lobe of lung	UBERON:0008949	48.93	silver quality
right hemisphere of cerebellum	UBERON:0014890	47.73	gold quality
prefrontal cortex	UBERON:0000451	47.69	silver quality
entorhinal cortex	UBERON:0002728	47.50	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.47

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.