LINC02808

Summary

LINC02808 (long intergenic non-protein coding RNA 2808, HGNC:54340) is a long non-coding RNA gene on chromosome 1p32.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54340
Approved symbol	LINC02808
Name	long intergenic non-protein coding RNA 2808
Location	1p32.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000284696
Ensembl biotype	lncRNA
Entrez	105378712
RNAcentral	URS0000BC5EFB — lncRNA, 1706 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 20 — 20 lncRNA

ENST00000641180, ENST00000641188, ENST00000641192, ENST00000641628, ENST00000641749, ENST00000641951, ENST00000641957, ENST00000642061, ENST00000661441, ENST00000850017, ENST00000850018, ENST00000850019, ENST00000850020, ENST00000850021, ENST00000850022, ENST00000850023, ENST00000850024, ENST00000850025, ENST00000850026, ENST00000850027

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000641180 — 2 exons

Exon	Start	End
ENSE00003812600	50321017	50321124
ENSE00003813634	50265742	50266589

Expression profiles

Bgee: expression breadth broad, 99 present calls, max score 89.69.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0237 / max 19.8477, expressed in 3 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
12269	0.0237	3

Top tissues by expression

104 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
left testis	UBERON:0004533	89.69	gold quality
right testis	UBERON:0004534	89.36	gold quality
testis	UBERON:0000473	89.16	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	86.48	gold quality
cerebellar vermis	UBERON:0004720	83.86	gold quality
skeletal muscle tissue	UBERON:0001134	79.18	silver quality
quadriceps femoris	UBERON:0001377	73.23	gold quality
bone marrow	UBERON:0002371	72.37	silver quality
cortical plate	UBERON:0005343	71.71	gold quality
thymus	UBERON:0002370	70.70	silver quality
sural nerve	UBERON:0015488	69.31	gold quality
liver	UBERON:0002107	61.35	gold quality
stromal cell of endometrium	CL:0002255	59.80	gold quality
right lobe of liver	UBERON:0001114	59.25	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	58.11	gold quality
monocyte	CL:0000576	56.73	gold quality
granulocyte	CL:0000094	55.68	gold quality
ganglionic eminence	UBERON:0004023	55.49	silver quality
prefrontal cortex	UBERON:0000451	54.61	gold quality
duodenum	UBERON:0002114	54.28	gold quality
multicellular organism	UBERON:0000468	53.83	gold quality
islet of Langerhans	UBERON:0000006	53.79	gold quality
blood	UBERON:0000178	53.37	gold quality
calcaneal tendon	UBERON:0003701	53.21	gold quality
gastrocnemius	UBERON:0001388	52.12	gold quality
adult mammalian kidney	UBERON:0000082	51.99	gold quality
endocervix	UBERON:0000458	51.62	gold quality
pancreas	UBERON:0001264	51.20	gold quality
prostate gland	UBERON:0002367	50.20	gold quality
frontal cortex	UBERON:0001870	50.02	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.73

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.