LINC02816

Summary

LINC02816 (long intergenic non-protein coding RNA 2816, HGNC:54348) is a long non-coding RNA gene on chromosome 1q25.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54348
Approved symbol	LINC02816
Name	long intergenic non-protein coding RNA 2816
Location	1q25.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000225857
Ensembl biotype	lncRNA
Entrez	105371638
RNAcentral	URS00026A23B6 — lncRNA, 5492 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000422858, ENST00000434447

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000422858 — 4 exons

Exon	Start	End
ENSE00001608414	180907801	180908005
ENSE00001656341	180908692	180908771
ENSE00001705372	180908873	180908942
ENSE00001732933	180908203	180908291

Expression profiles

Bgee: expression breadth ubiquitous, 116 present calls, max score 76.03.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0318 / max 50.3955, expressed in 4 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
6971	0.0318	4

Top tissues by expression

120 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
bone marrow cell	CL:0002092	76.03	gold quality
bone marrow	UBERON:0002371	75.15	silver quality
cortical plate	UBERON:0005343	74.14	gold quality
cerebellar vermis	UBERON:0004720	72.50	gold quality
skeletal muscle tissue	UBERON:0001134	71.03	silver quality
thymus	UBERON:0002370	68.24	silver quality
islet of Langerhans	UBERON:0000006	66.08	gold quality
quadriceps femoris	UBERON:0001377	64.14	gold quality
ganglionic eminence	UBERON:0004023	64.09	gold quality
endometrium	UBERON:0001295	61.74	gold quality
urinary bladder	UBERON:0001255	60.82	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	58.03	gold quality
pancreas	UBERON:0001264	57.36	gold quality
prefrontal cortex	UBERON:0000451	55.80	gold quality
vermiform appendix	UBERON:0001154	55.26	gold quality
liver	UBERON:0002107	54.97	silver quality
heart left ventricle	UBERON:0002084	54.83	gold quality
primary visual cortex	UBERON:0002436	54.75	gold quality
stromal cell of endometrium	CL:0002255	54.39	silver quality
monocyte	CL:0000576	54.34	gold quality
blood	UBERON:0000178	54.24	gold quality
adult mammalian kidney	UBERON:0000082	53.82	gold quality
lymph node	UBERON:0000029	53.72	gold quality
granulocyte	CL:0000094	53.23	gold quality
placenta	UBERON:0001987	52.80	gold quality
heart	UBERON:0000948	52.72	gold quality
calcaneal tendon	UBERON:0003701	52.51	silver quality
kidney	UBERON:0002113	52.32	gold quality
smooth muscle tissue	UBERON:0001135	52.29	gold quality
apex of heart	UBERON:0002098	52.00	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.00

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.