LINC02817

Summary

LINC02817 (long intergenic non-protein coding RNA 2817, HGNC:32042) is a long non-coding RNA gene on chromosome 1q41.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:32042
Approved symbol	LINC02817
Name	long intergenic non-protein coding RNA 2817
Location	1q41
Locus type	RNA, long non-coding
Status	Approved
Aliases	FLJ46636
Ensembl gene	ENSG00000234754
Ensembl biotype	lncRNA
Entrez	400804
RNAcentral	URS000075EC5D — lncRNA, 4492 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 18 — 18 lncRNA

ENST00000434398, ENST00000439004, ENST00000652927, ENST00000653714, ENST00000656904, ENST00000659256, ENST00000660437, ENST00000660516, ENST00000662740, ENST00000664578, ENST00000665847, ENST00000666589, ENST00000668399, ENST00000670872, ENST00000779986, ENST00000779987, ENST00000779988, ENST00000779989

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000434398 — 3 exons

Exon	Start	End
ENSE00001746403	221333835	221333985
ENSE00001790437	221332161	221333070
ENSE00003854407	221335863	221335958

Expression profiles

Bgee: expression breadth ubiquitous, 124 present calls, max score 74.90.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0104 / max 6.1592, expressed in 2 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
17569	0.0104	2

Top tissues by expression

124 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	74.90	silver quality
popliteal artery	UBERON:0002250	65.54	gold quality
tibial artery	UBERON:0007610	65.50	gold quality
granulocyte	CL:0000094	65.23	gold quality
ventricular zone	UBERON:0003053	61.99	gold quality
calcaneal tendon	UBERON:0003701	60.00	gold quality
monocyte	CL:0000576	59.80	gold quality
bone marrow	UBERON:0002371	59.52	gold quality
right coronary artery	UBERON:0001625	59.06	gold quality
ganglionic eminence	UBERON:0004023	58.73	gold quality
cortical plate	UBERON:0005343	58.20	silver quality
smooth muscle tissue	UBERON:0001135	57.97	gold quality
endometrium	UBERON:0001295	56.00	gold quality
stromal cell of endometrium	CL:0002255	54.75	gold quality
skeletal muscle tissue	UBERON:0001134	54.49	gold quality
subcutaneous adipose tissue	UBERON:0002190	53.85	gold quality
left coronary artery	UBERON:0001626	53.40	gold quality
duodenum	UBERON:0002114	52.91	gold quality
lower esophagus	UBERON:0013473	51.94	gold quality
lower esophagus muscularis layer	UBERON:0035833	51.92	gold quality
blood	UBERON:0000178	51.63	gold quality
myometrium	UBERON:0001296	51.25	gold quality
prefrontal cortex	UBERON:0000451	50.97	gold quality
liver	UBERON:0002107	50.90	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	50.84	gold quality
urinary bladder	UBERON:0001255	50.79	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	50.52	gold quality
lymph node	UBERON:0000029	50.49	silver quality
islet of Langerhans	UBERON:0000006	50.39	gold quality
right lung	UBERON:0002167	50.18	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	3.58

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.