LINC02821

Summary

LINC02821 (long intergenic non-protein coding RNA 2821, HGNC:54352) is a long non-coding RNA gene on chromosome 12q15.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54352
Approved symbol	LINC02821
Name	long intergenic non-protein coding RNA 2821
Location	12q15
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000257139
Ensembl biotype	lncRNA
Entrez	105369826
RNAcentral	URS0000287EA1 — lncRNA, 578 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000552324, ENST00000807995

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000552324 — 3 exons

Exon	Start	End
ENSE00002359505	70201715	70202004
ENSE00002363686	70199733	70199819
ENSE00002421333	70180338	70180538

Expression profiles

Bgee: expression breadth ubiquitous, 122 present calls, max score 81.38.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 1.2441 / max 180.6299, expressed in 98 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
126770	1.2441	98

Top tissues by expression

122 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.38	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	80.00	gold quality
colonic epithelium	UBERON:0000397	79.47	gold quality
bone marrow cell	CL:0002092	78.72	gold quality
right hemisphere of cerebellum	UBERON:0014890	75.80	gold quality
sural nerve	UBERON:0015488	75.15	gold quality
cerebellum	UBERON:0002037	74.90	gold quality
cerebellar cortex	UBERON:0002129	74.87	gold quality
cerebellar hemisphere	UBERON:0002245	74.86	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	74.47	gold quality
bone marrow	UBERON:0002371	72.91	gold quality
primary visual cortex	UBERON:0002436	72.80	gold quality
liver	UBERON:0002107	72.64	gold quality
ventricular zone	UBERON:0003053	71.70	gold quality
tonsil	UBERON:0002372	71.15	gold quality
hindlimb stylopod muscle	UBERON:0004252	70.16	gold quality
substantia nigra	UBERON:0002038	69.01	gold quality
right lobe of liver	UBERON:0001114	68.47	gold quality
cortex of kidney	UBERON:0001225	68.46	gold quality
corpus callosum	UBERON:0002336	68.16	gold quality
skeletal muscle tissue	UBERON:0001134	67.59	gold quality
Ammon’s horn	UBERON:0001954	66.62	gold quality
kidney	UBERON:0002113	66.14	gold quality
urinary bladder	UBERON:0001255	65.41	gold quality
putamen	UBERON:0001874	65.08	gold quality
brain	UBERON:0000955	65.06	gold quality
cortical plate	UBERON:0005343	64.85	gold quality
ganglionic eminence	UBERON:0004023	64.44	gold quality
right frontal lobe	UBERON:0002810	64.32	gold quality
muscle of leg	UBERON:0001383	64.28	gold quality

Single-cell (SCXA)

Detected in 2 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-GEOD-180759	yes	430.22
E-ANND-3	no	0.96

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.