LINC02822

Summary

LINC02822 (long intergenic non-protein coding RNA 2822, HGNC:54353) is a long non-coding RNA gene on chromosome 12q21.33.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54353
Approved symbol	LINC02822
Name	long intergenic non-protein coding RNA 2822
Location	12q21.33
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000286021
Ensembl biotype	lncRNA
Entrez	102724834
RNAcentral	URS0000EF57B8 — lncRNA, 5232 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 37 — 37 lncRNA

ENST00000652014, ENST00000656065, ENST00000658113, ENST00000661507, ENST00000664727, ENST00000666236, ENST00000667652, ENST00000667911, ENST00000668008, ENST00000671090, ENST00000687953, ENST00000693033, ENST00000722838, ENST00000722839, ENST00000722840, ENST00000722841, ENST00000722842, ENST00000722843, ENST00000722844, ENST00000722845, ENST00000722846, ENST00000722847, ENST00000722848, ENST00000722849, ENST00000722850, ENST00000722851, ENST00000722852, ENST00000722853, ENST00000722854, ENST00000722855, ENST00000722856, ENST00000722857, ENST00000722858, ENST00000722859, ENST00000722860, ENST00000722861, ENST00000722862

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000652014 — 6 exons

Exon	Start	End
ENSE00003841432	90676549	90676651
ENSE00003846208	90576495	90576581
ENSE00003847409	90817373	90818303
ENSE00003849379	90593569	90593811
ENSE00003849948	90679635	90679945
ENSE00003851026	90675293	90675408

Expression profiles

Bgee: expression breadth ubiquitous, 109 present calls, max score 89.91.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1250 / max 57.4145, expressed in 37 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
127288	0.0651	28
127289	0.0599	19

Top tissues by expression

109 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	89.91	gold quality
bone marrow cell	CL:0002092	81.24	gold quality
colonic epithelium	UBERON:0000397	79.83	gold quality
tonsil	UBERON:0002372	71.14	gold quality
superior frontal gyrus	UBERON:0002661	70.84	gold quality
skeletal muscle tissue	UBERON:0001134	69.22	gold quality
urinary bladder	UBERON:0001255	66.90	gold quality
prefrontal cortex	UBERON:0000451	66.71	gold quality
corpus callosum	UBERON:0002336	66.29	gold quality
kidney	UBERON:0002113	66.11	gold quality
liver	UBERON:0002107	65.51	gold quality
frontal cortex	UBERON:0001870	63.67	gold quality
thoracic mammary gland	UBERON:0005200	63.34	gold quality
muscle tissue	UBERON:0002385	62.45	gold quality
heart left ventricle	UBERON:0002084	61.53	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	61.52	gold quality
cerebral cortex	UBERON:0000956	60.64	gold quality
Brodmann (1909) area 9	UBERON:0013540	60.57	gold quality
small intestine	UBERON:0002108	60.44	silver quality
ventricular zone	UBERON:0003053	60.12	gold quality
putamen	UBERON:0001874	59.64	gold quality
hindlimb stylopod muscle	UBERON:0004252	59.64	gold quality
anterior cingulate cortex	UBERON:0009835	59.52	gold quality
lung	UBERON:0002048	59.49	gold quality
placenta	UBERON:0001987	58.90	gold quality
heart	UBERON:0000948	58.80	gold quality
right frontal lobe	UBERON:0002810	58.76	gold quality
adrenal gland	UBERON:0002369	58.58	gold quality
ganglionic eminence	UBERON:0004023	58.32	gold quality
brain	UBERON:0000955	58.01	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.29

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.