LINC02827

Summary

LINC02827 (long intergenic non-protein coding RNA 2827, HGNC:54358) is a long non-coding RNA gene on chromosome 12p13.32.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54358
Approved symbol	LINC02827
Name	long intergenic non-protein coding RNA 2827
Location	12p13.32
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000236908
Ensembl biotype	lncRNA
Entrez	105369606
RNAcentral	URS00026A1E70 — lncRNA, 16922 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 13 — 13 lncRNA

ENST00000432994, ENST00000543036, ENST00000662026, ENST00000747532, ENST00000747533, ENST00000747534, ENST00000747535, ENST00000747536, ENST00000747537, ENST00000747538, ENST00000747539, ENST00000747540, ENST00000747541

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000432994 — 2 exons

Exon	Start	End
ENSE00002259013	3323349	3325343
ENSE00002267328	3318718	3319726

Expression profiles

Bgee: expression breadth ubiquitous, 106 present calls, max score 67.30.

Top tissues by expression

106 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
bone marrow cell	CL:0002092	67.30	silver quality
colonic epithelium	UBERON:0000397	64.74	silver quality
mucosa of stomach	UBERON:0001199	60.82	gold quality
cortical plate	UBERON:0005343	60.57	silver quality
body of pancreas	UBERON:0001150	59.39	gold quality
tonsil	UBERON:0002372	58.81	silver quality
pancreas	UBERON:0001264	58.53	gold quality
placenta	UBERON:0001987	55.33	gold quality
primary visual cortex	UBERON:0002436	51.77	gold quality
right hemisphere of cerebellum	UBERON:0014890	51.48	gold quality
cerebellum	UBERON:0002037	51.22	gold quality
cerebellar cortex	UBERON:0002129	51.17	gold quality
cerebellar hemisphere	UBERON:0002245	51.15	gold quality
gall bladder	UBERON:0002110	51.04	gold quality
cortex of kidney	UBERON:0001225	50.86	gold quality
prefrontal cortex	UBERON:0000451	50.31	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	49.49	gold quality
right lobe of liver	UBERON:0001114	48.97	silver quality
monocyte	CL:0000576	48.87	silver quality
tibial artery	UBERON:0007610	48.47	gold quality
popliteal artery	UBERON:0002250	48.45	gold quality
islet of Langerhans	UBERON:0000006	48.11	gold quality
adenohypophysis	UBERON:0002196	47.89	gold quality
metanephros cortex	UBERON:0010533	47.70	gold quality
heart left ventricle	UBERON:0002084	47.17	gold quality
muscle of leg	UBERON:0001383	47.03	silver quality
kidney	UBERON:0002113	46.61	silver quality
heart	UBERON:0000948	46.58	gold quality
frontal cortex	UBERON:0001870	46.45	gold quality
saliva-secreting gland	UBERON:0001044	46.44	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.47

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.