LINC02828

Summary

LINC02828 (long intergenic non-protein coding RNA 2828, HGNC:54359) is a long non-coding RNA gene on chromosome 6p22.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54359
Approved symbol	LINC02828
Name	long intergenic non-protein coding RNA 2828
Location	6p22.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000224164
Ensembl biotype	lncRNA
Entrez	105374978
RNAcentral	URS00026A1AF2 — lncRNA, 593 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 11 — 11 lncRNA

ENST00000423504, ENST00000453179, ENST00000665572, ENST00000668439, ENST00000824967, ENST00000824968, ENST00000824969, ENST00000824970, ENST00000824971, ENST00000824972, ENST00000824973

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000423504 — 3 exons

Exon	Start	End
ENSE00001719383	24748996	24749148
ENSE00004234791	24751563	24751961
ENSE00004234794	24742011	24742346

Expression profiles

Bgee: expression breadth ubiquitous, 108 present calls, max score 57.19.

FANTOM5 (CAGE): breadth broad, TPM avg 1.4237 / max 211.2762, expressed in 409 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
66407	0.7939	236
66408	0.6298	253

Top tissues by expression

108 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
C1 segment of cervical spinal cord	UBERON:0006469	57.19	gold quality
prefrontal cortex	UBERON:0000451	56.97	gold quality
monocyte	CL:0000576	56.17	gold quality
vermiform appendix	UBERON:0001154	55.50	gold quality
lymph node	UBERON:0000029	55.31	gold quality
muscle tissue	UBERON:0002385	54.82	gold quality
gall bladder	UBERON:0002110	54.12	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	53.59	gold quality
hypothalamus	UBERON:0001898	53.12	gold quality
blood	UBERON:0000178	52.54	gold quality
myometrium	UBERON:0001296	52.46	gold quality
amygdala	UBERON:0001876	52.45	gold quality
placenta	UBERON:0001987	52.38	gold quality
liver	UBERON:0002107	52.38	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	52.29	gold quality
bone marrow	UBERON:0002371	52.22	silver quality
calcaneal tendon	UBERON:0003701	51.88	silver quality
substantia nigra	UBERON:0002038	51.57	gold quality
smooth muscle tissue	UBERON:0001135	50.65	gold quality
left adrenal gland	UBERON:0001234	49.98	gold quality
adrenal gland	UBERON:0002369	49.93	gold quality
superior frontal gyrus	UBERON:0002661	49.91	gold quality
left adrenal gland cortex	UBERON:0035825	49.82	gold quality
islet of Langerhans	UBERON:0000006	49.72	gold quality
frontal cortex	UBERON:0001870	49.71	gold quality
Ammon’s horn	UBERON:0001954	49.47	gold quality
caudate nucleus	UBERON:0001873	49.45	gold quality
right adrenal gland cortex	UBERON:0035827	49.37	gold quality
brain	UBERON:0000955	49.00	gold quality
cerebral cortex	UBERON:0000956	48.99	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.63

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.