LINC02833

Summary

LINC02833 (long intergenic non-protein coding RNA 2833, HGNC:54367) is a long non-coding RNA gene on chromosome 14q32.12.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54367
Approved symbol	LINC02833
Name	long intergenic non-protein coding RNA 2833
Location	14q32.12
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000258742
Ensembl biotype	lncRNA
Entrez	105370629
RNAcentral	URS00026A2539 — lncRNA, 895 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 16 — 16 lncRNA

ENST00000553485, ENST00000554653, ENST00000556466, ENST00000557689, ENST00000722302, ENST00000722303, ENST00000722304, ENST00000722305, ENST00000722306, ENST00000722307, ENST00000722308, ENST00000722309, ENST00000722310, ENST00000722311, ENST00000722312, ENST00000722313

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000553485 — 3 exons

Exon	Start	End
ENSE00002432655	92891795	92891887
ENSE00004042815	92892756	92893508
ENSE00004042823	92891407	92891701

Expression profiles

Bgee: expression breadth ubiquitous, 105 present calls, max score 83.13.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0075 / max 6.7663, expressed in 3 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
141150	0.0075	3

Top tissues by expression

105 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	83.13	gold quality
left testis	UBERON:0004533	75.30	gold quality
testis	UBERON:0000473	74.65	gold quality
right testis	UBERON:0004534	73.64	gold quality
hindlimb stylopod muscle	UBERON:0004252	61.77	gold quality
cortical plate	UBERON:0005343	59.48	gold quality
ganglionic eminence	UBERON:0004023	59.41	gold quality
ventricular zone	UBERON:0003053	57.73	silver quality
bone marrow	UBERON:0002371	56.38	gold quality
endometrium	UBERON:0001295	56.28	gold quality
left adrenal gland cortex	UBERON:0035825	54.06	gold quality
monocyte	CL:0000576	54.05	gold quality
skeletal muscle tissue	UBERON:0001134	53.50	silver quality
leukocyte	CL:0000738	53.02	gold quality
right uterine tube	UBERON:0001302	52.36	gold quality
prefrontal cortex	UBERON:0000451	52.20	gold quality
blood	UBERON:0000178	52.18	gold quality
smooth muscle tissue	UBERON:0001135	51.96	gold quality
islet of Langerhans	UBERON:0000006	51.73	gold quality
right coronary artery	UBERON:0001625	51.65	gold quality
fallopian tube	UBERON:0003889	50.35	gold quality
duodenum	UBERON:0002114	50.18	gold quality
lymph node	UBERON:0000029	49.84	silver quality
right lobe of liver	UBERON:0001114	49.01	gold quality
multicellular organism	UBERON:0000468	48.78	gold quality
muscle of leg	UBERON:0001383	48.61	gold quality
gastrocnemius	UBERON:0001388	47.72	gold quality
gall bladder	UBERON:0002110	47.29	silver quality
adult mammalian kidney	UBERON:0000082	46.78	silver quality
popliteal artery	UBERON:0002250	46.69	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.23

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.