LINC02835

Summary

LINC02835 (long intergenic non-protein coding RNA 2835, HGNC:54369) is a long non-coding RNA gene on chromosome 4q13.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54369
Approved symbol	LINC02835
Name	long intergenic non-protein coding RNA 2835
Location	4q13.1
Locus type	RNA, long non-coding
Status	Approved
Aliases	lncMER52A
Ensembl gene	ENSG00000285711
Ensembl biotype	lncRNA
Entrez	105377256
RNAcentral	URS0002A581BC — lncRNA, 1194 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000649562, ENST00000818401, ENST00000818402

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000649562 — 4 exons

Exon	Start	End
ENSE00003831505	65241182	65241814
ENSE00003834109	65238384	65238464
ENSE00004222371	65206455	65206783
ENSE00004222372	65225860	65226010

Expression profiles

Bgee: expression breadth broad, 74 present calls, max score 93.43.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1121 / max 15.0808, expressed in 65 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
52279	0.1121	65

Top tissues by expression

74 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	93.43	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	84.20	gold quality
stromal cell of endometrium	CL:0002255	58.58	gold quality
hindlimb stylopod muscle	UBERON:0004252	56.58	gold quality
bone marrow	UBERON:0002371	56.42	gold quality
blood	UBERON:0000178	54.64	silver quality
monocyte	CL:0000576	52.99	gold quality
placenta	UBERON:0001987	52.13	gold quality
cortex of kidney	UBERON:0001225	49.98	silver quality
islet of Langerhans	UBERON:0000006	49.59	gold quality
gall bladder	UBERON:0002110	49.30	gold quality
liver	UBERON:0002107	48.76	gold quality
lymph node	UBERON:0000029	47.49	silver quality
calcaneal tendon	UBERON:0003701	47.05	silver quality
body of stomach	UBERON:0001161	45.82	gold quality
body of uterus	UBERON:0009853	45.79	silver quality
gastrocnemius	UBERON:0001388	45.64	silver quality
endometrium	UBERON:0001295	45.02	gold quality
multicellular organism	UBERON:0000468	44.61	gold quality
frontal cortex	UBERON:0001870	44.47	silver quality
superior frontal gyrus	UBERON:0002661	44.41	silver quality
Brodmann (1909) area 9	UBERON:0013540	43.90	silver quality
stomach	UBERON:0000945	43.14	silver quality
body of pancreas	UBERON:0001150	43.11	silver quality
right lobe of liver	UBERON:0001114	43.09	silver quality
fundus of stomach	UBERON:0001160	42.84	gold quality
fallopian tube	UBERON:0003889	42.68	gold quality
right atrium auricular region	UBERON:0006631	42.56	silver quality
left adrenal gland	UBERON:0001234	42.43	silver quality
small intestine Peyer’s patch	UBERON:0003454	42.43	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.47

Regulation

Is transcription factor: no

Literature-anchored findings (GeneRIF, showing 1)

• An LTR Retrotransposon-Derived Long Noncoding RNA lncMER52A Promotes Hepatocellular Carcinoma Progression by Binding p120-Catenin. (PMID:31874857)

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.