LINC02838

Summary

LINC02838 (long intergenic non-protein coding RNA 2838, HGNC:54372) is a long non-coding RNA gene on chromosome 7p12.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54372
Approved symbol	LINC02838
Name	long intergenic non-protein coding RNA 2838
Location	7p12.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000285536
Ensembl biotype	lncRNA
Entrez	105375273
RNAcentral	URS00026A1D1A — lncRNA, 649 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000649656, ENST00000816575

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000649656 — 3 exons

Exon	Start	End
ENSE00003831409	48708795	48708914
ENSE00003837836	48708327	48708703
ENSE00003840782	48711157	48711582

Expression profiles

Bgee: expression breadth broad, 70 present calls, max score 94.91.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0506 / max 45.1085, expressed in 3 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
78601	0.0506	3

Top tissues by expression

179 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	94.91	gold quality
sperm	CL:0000019	82.64	gold quality
left testis	UBERON:0004533	80.62	gold quality
right testis	UBERON:0004534	80.44	gold quality
testis	UBERON:0000473	78.01	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	76.57	gold quality
buccal mucosa cell	CL:0002336	59.25	gold quality
skin of hip	UBERON:0001554	58.91	gold quality
lower lobe of lung	UBERON:0008949	57.28	silver quality
oviduct epithelium	UBERON:0004804	55.95	silver quality
upper leg skin	UBERON:0004262	55.77	silver quality
fallopian tube	UBERON:0003889	53.96	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	53.87	gold quality
endocervix	UBERON:0000458	53.55	gold quality
hypothalamus	UBERON:0001898	52.24	gold quality
anterior cingulate cortex	UBERON:0009835	52.23	gold quality
left ovary	UBERON:0002119	51.61	gold quality
endothelial cell	CL:0000115	51.59	gold quality
minor salivary gland	UBERON:0001830	51.28	gold quality
monocyte	CL:0000576	50.79	silver quality
right uterine tube	UBERON:0001302	49.40	gold quality
ectocervix	UBERON:0012249	48.86	gold quality
coronary artery	UBERON:0001621	48.62	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	48.57	gold quality
uterine cervix	UBERON:0000002	48.39	gold quality
cerebellar vermis	UBERON:0004720	48.32	gold quality
amygdala	UBERON:0001876	48.07	gold quality
vagina	UBERON:0000996	47.77	gold quality
upper lobe of lung	UBERON:0008948	47.48	silver quality
Brodmann (1909) area 9	UBERON:0013540	47.39	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.47

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.