LINC02839

Summary

LINC02839 (long intergenic non-protein coding RNA 2839, HGNC:54373) is a long non-coding RNA gene on chromosome 8q21.13.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54373
Approved symbol	LINC02839
Name	long intergenic non-protein coding RNA 2839
Location	8q21.13
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000254123
Ensembl biotype	lncRNA
Entrez	105375929
RNAcentral	URS00026A233B — lncRNA, 428 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 6 — 6 lncRNA

ENST00000520155, ENST00000520988, ENST00000654599, ENST00000848615, ENST00000848616, ENST00000848617

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000520155 — 3 exons

Exon	Start	End
ENSE00002101632	82151758	82151862
ENSE00002110745	82098451	82099120
ENSE00002135396	82160530	82160577

Expression profiles

Bgee: expression breadth broad, 75 present calls, max score 84.63.

Top tissues by expression

75 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	84.63	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	77.07	gold quality
left testis	UBERON:0004533	65.46	gold quality
testis	UBERON:0000473	65.26	gold quality
right testis	UBERON:0004534	63.19	gold quality
prefrontal cortex	UBERON:0000451	59.50	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	58.17	gold quality
monocyte	CL:0000576	57.37	gold quality
heart left ventricle	UBERON:0002084	56.96	gold quality
superior frontal gyrus	UBERON:0002661	55.87	gold quality
blood	UBERON:0000178	53.53	gold quality
corpus callosum	UBERON:0002336	53.41	silver quality
multicellular organism	UBERON:0000468	52.38	gold quality
Brodmann (1909) area 9	UBERON:0013540	51.66	gold quality
gastrocnemius	UBERON:0001388	51.24	gold quality
endometrium	UBERON:0001295	51.17	gold quality
frontal cortex	UBERON:0001870	51.13	gold quality
endocervix	UBERON:0000458	50.48	gold quality
anterior cingulate cortex	UBERON:0009835	50.13	gold quality
cerebral cortex	UBERON:0000956	49.90	gold quality
muscle layer of sigmoid colon	UBERON:0035805	49.12	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	49.03	gold quality
substantia nigra	UBERON:0002038	48.35	gold quality
kidney	UBERON:0002113	48.33	gold quality
esophagus mucosa	UBERON:0002469	48.13	gold quality
heart	UBERON:0000948	47.76	gold quality
transverse colon	UBERON:0001157	47.39	gold quality
amygdala	UBERON:0001876	47.02	gold quality
colon	UBERON:0001155	47.01	gold quality
body of pancreas	UBERON:0001150	46.86	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.62

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.