LINC02840

Summary

LINC02840 (long intergenic non-protein coding RNA 2840, HGNC:54374) is a long non-coding RNA gene on chromosome 6q25.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54374
Approved symbol	LINC02840
Name	long intergenic non-protein coding RNA 2840
Location	6q25.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000224893
Ensembl biotype	lncRNA
Entrez	105378065
RNAcentral	URS00026A1B8F — lncRNA, 1448 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 14 — 14 lncRNA

ENST00000417654, ENST00000456715, ENST00000652681, ENST00000654424, ENST00000656248, ENST00000657202, ENST00000658966, ENST00000659837, ENST00000663653, ENST00000666093, ENST00000667732, ENST00000670414, ENST00000670640, ENST00000671138

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000417654 — 4 exons

Exon	Start	End
ENSE00001801897	152805006	152805128
ENSE00004222958	152804750	152804873
ENSE00004222959	152875707	152875986
ENSE00004222960	152831854	152831936

Expression profiles

Bgee: expression breadth ubiquitous, 113 present calls, max score 77.77.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0042 / max 6.6188, expressed in 1 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
76266	0.0042	1

Top tissues by expression

113 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	77.77	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	74.25	gold quality
ganglionic eminence	UBERON:0004023	61.20	gold quality
right hemisphere of cerebellum	UBERON:0014890	60.51	gold quality
liver	UBERON:0002107	60.04	gold quality
cerebellar hemisphere	UBERON:0002245	59.98	gold quality
cerebellum	UBERON:0002037	59.86	gold quality
cerebellar cortex	UBERON:0002129	59.83	gold quality
placenta	UBERON:0001987	59.81	gold quality
monocyte	CL:0000576	57.59	gold quality
vermiform appendix	UBERON:0001154	54.43	gold quality
rectum	UBERON:0001052	53.10	gold quality
blood	UBERON:0000178	52.81	gold quality
hindlimb stylopod muscle	UBERON:0004252	52.81	silver quality
superior frontal gyrus	UBERON:0002661	52.56	gold quality
primary visual cortex	UBERON:0002436	52.47	gold quality
islet of Langerhans	UBERON:0000006	52.39	gold quality
stromal cell of endometrium	CL:0002255	52.37	silver quality
prefrontal cortex	UBERON:0000451	51.82	gold quality
right lobe of liver	UBERON:0001114	51.62	gold quality
cortex of kidney	UBERON:0001225	51.54	gold quality
muscle layer of sigmoid colon	UBERON:0035805	51.24	gold quality
tonsil	UBERON:0002372	49.96	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	49.89	gold quality
lymph node	UBERON:0000029	49.69	gold quality
colon	UBERON:0001155	49.67	gold quality
thoracic mammary gland	UBERON:0005200	49.62	silver quality
bone marrow	UBERON:0002371	49.36	silver quality
brain	UBERON:0000955	48.84	gold quality
intestine	UBERON:0000160	48.83	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.39

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.