LINC02842

Summary

LINC02842 (long intergenic non-protein coding RNA 2842, HGNC:54378) is a long non-coding RNA gene on chromosome 8q12.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54378
Approved symbol	LINC02842
Name	long intergenic non-protein coding RNA 2842
Location	8q12.3
Locus type	RNA, long non-coding
Status	Approved
Aliases	RP11-705O24.1
Ensembl gene	ENSG00000254119
Ensembl biotype	lncRNA
Entrez	101929628
RNAcentral	URS00026A1EFE — lncRNA, 1032 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 51 — 51 lncRNA

ENST00000517953, ENST00000518593, ENST00000519215, ENST00000519452, ENST00000519766, ENST00000519967, ENST00000519990, ENST00000520097, ENST00000520862, ENST00000521501, ENST00000522022, ENST00000523042, ENST00000523728, ENST00000715768, ENST00000715769, ENST00000824009, ENST00000829200, ENST00000829201, ENST00000829202, ENST00000829203, ENST00000829204, ENST00000829205, ENST00000829206, ENST00000829207, ENST00000829208, ENST00000829209, ENST00000829210, ENST00000829211, ENST00000829212, ENST00000829213, ENST00000829214, ENST00000829215, ENST00000829216, ENST00000829217, ENST00000829218, ENST00000829219, ENST00000829220, ENST00000829221, ENST00000829222, ENST00000829223, ENST00000829224, ENST00000829225, ENST00000829226, ENST00000829227, ENST00000829228, ENST00000829229, ENST00000829230, ENST00000829231, ENST00000829232, ENST00000850652, ENST00000850662

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000517953 — 5 exons

Exon	Start	End
ENSE00002101742	61854383	61854434
ENSE00002125961	61834873	61834996
ENSE00002130459	61855664	61855852
ENSE00004242433	61785052	61785156
ENSE00004242458	61852659	61852776

Expression profiles

Bgee: expression breadth ubiquitous, 107 present calls, max score 94.24.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.2265 / max 172.9098, expressed in 13 samples.

FANTOM5 promoters (4 alternative TSS)

Promoter ID	TPM avg	Samples expressed
89087	0.1273	9
89084	0.0571	3
89085	0.0340	4
89086	0.0081	2

Top tissues by expression

203 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
left testis	UBERON:0004533	94.24	gold quality
right testis	UBERON:0004534	93.42	gold quality
testis	UBERON:0000473	89.97	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	85.03	gold quality
bone marrow cell	CL:0002092	68.87	silver quality
sperm	CL:0000019	67.66	gold quality
monocyte	CL:0000576	65.51	gold quality
buccal mucosa cell	CL:0002336	64.46	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	58.08	gold quality
islet of Langerhans	UBERON:0000006	57.26	gold quality
body of stomach	UBERON:0001161	56.05	gold quality
lymph node	UBERON:0000029	55.94	gold quality
stomach	UBERON:0000945	54.22	gold quality
adrenal tissue	UBERON:0018303	53.77	gold quality
muscle of leg	UBERON:0001383	52.91	gold quality
gastrocnemius	UBERON:0001388	52.73	gold quality
tonsil	UBERON:0002372	52.73	gold quality
right lobe of liver	UBERON:0001114	52.63	gold quality
right adrenal gland	UBERON:0001233	50.30	gold quality
left adrenal gland	UBERON:0001234	50.30	gold quality
right atrium auricular region	UBERON:0006631	50.12	gold quality
adrenal gland	UBERON:0002369	50.10	gold quality
right adrenal gland cortex	UBERON:0035827	49.85	gold quality
cardiac atrium	UBERON:0002081	49.66	gold quality
left adrenal gland cortex	UBERON:0035825	49.49	gold quality
adrenal cortex	UBERON:0001235	48.69	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	47.99	gold quality
tibial artery	UBERON:0007610	47.74	gold quality
anatomical system	UBERON:0000467	47.33	gold quality
heart	UBERON:0000948	47.25	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.83

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.