LINC02843

Summary

LINC02843 (long intergenic non-protein coding RNA 2843, HGNC:27847) is a long non-coding RNA gene on chromosome 9q22.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:27847
Approved symbol	LINC02843
Name	long intergenic non-protein coding RNA 2843
Location	9q22.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000228189
Ensembl biotype	lncRNA
Entrez	286238
RNAcentral	URS00021231E4 — lncRNA, 1244 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 12 — 12 lncRNA

ENST00000418343, ENST00000544644, ENST00000656971, ENST00000657084, ENST00000657830, ENST00000660651, ENST00000661837, ENST00000663346, ENST00000663432, ENST00000664638, ENST00000668916, ENST00000669106

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000418343 — 4 exons

Exon	Start	End
ENSE00001752682	88646921	88647660
ENSE00001796133	88627191	88627402
ENSE00003854026	88651961	88652173
ENSE00003864492	88628257	88628351

Expression profiles

Bgee: expression breadth broad, 43 present calls, max score 74.82.

Top tissues by expression

159 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	74.82	gold quality
left testis	UBERON:0004533	71.32	gold quality
testis	UBERON:0000473	69.23	gold quality
right testis	UBERON:0004534	69.20	gold quality
sperm	CL:0000019	68.50	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	62.77	gold quality
upper lobe of lung	UBERON:0008948	56.36	silver quality
lower lobe of lung	UBERON:0008949	56.11	silver quality
skin of hip	UBERON:0001554	52.10	silver quality
lateral globus pallidus	UBERON:0002476	49.44	gold quality
gastrocnemius	UBERON:0001388	49.01	gold quality
monocyte	CL:0000576	48.54	silver quality
anterior cingulate cortex	UBERON:0009835	48.35	gold quality
adult organism	UBERON:0007023	47.27	silver quality
upper leg skin	UBERON:0004262	46.83	silver quality
prefrontal cortex	UBERON:0000451	45.92	silver quality
Brodmann (1909) area 9	UBERON:0013540	45.92	silver quality
coronary artery	UBERON:0001621	45.72	gold quality
body of uterus	UBERON:0009853	45.49	gold quality
anatomical system	UBERON:0000467	45.27	gold quality
material anatomical entity	UBERON:0000465	44.93	gold quality
multicellular organism	UBERON:0000468	44.88	gold quality
amygdala	UBERON:0001876	44.54	gold quality
buccal mucosa cell	CL:0002336	44.42	gold quality
tibial nerve	UBERON:0001323	44.24	gold quality
tibial artery	UBERON:0007610	43.78	silver quality
deltoid	UBERON:0001476	43.52	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	43.37	gold quality
skin of leg	UBERON:0001511	43.32	gold quality
substantia nigra pars reticulata	UBERON:0001966	43.17	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.81

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.