LINC02844

Summary

LINC02844 (long intergenic non-protein coding RNA 2844, HGNC:54379) is a long non-coding RNA gene on chromosome 8q22.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54379
Approved symbol	LINC02844
Name	long intergenic non-protein coding RNA 2844
Location	8q22.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000253679
Ensembl biotype	lncRNA
Entrez	105375679
RNAcentral	URS00026A205D — lncRNA, 1005 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000523121, ENST00000751470, ENST00000751471, ENST00000751472, ENST00000751473

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000523121 — 2 exons

Exon	Start	End
ENSE00004096803	101261537	101262382
ENSE00004096805	101262767	101262950

Expression profiles

Bgee: expression breadth broad, 63 present calls, max score 80.90.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0129 / max 8.8046, expressed in 3 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
94228	0.0129	3

Top tissues by expression

192 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sperm	CL:0000019	80.90	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.66	silver quality
left testis	UBERON:0004533	79.88	gold quality
right testis	UBERON:0004534	78.29	gold quality
testis	UBERON:0000473	77.50	gold quality
stromal cell of endometrium	CL:0002255	63.67	gold quality
ventricular zone	UBERON:0003053	60.80	gold quality
pancreatic ductal cell	CL:0002079	59.91	silver quality
ileal mucosa	UBERON:0000331	58.00	silver quality
tibialis anterior	UBERON:0001385	56.62	silver quality
body of pancreas	UBERON:0001150	56.23	gold quality
ganglionic eminence	UBERON:0004023	55.44	silver quality
pancreas	UBERON:0001264	55.36	gold quality
deltoid	UBERON:0001476	54.68	gold quality
epithelial cell of pancreas	CL:0000083	54.64	gold quality
cardiac muscle of right atrium	UBERON:0003379	54.34	gold quality
left ventricle myocardium	UBERON:0006566	54.23	gold quality
kidney epithelium	UBERON:0004819	53.93	gold quality
upper arm skin	UBERON:0004263	53.52	gold quality
cardiac atrium	UBERON:0002081	51.83	gold quality
muscle of leg	UBERON:0001383	51.37	gold quality
myocardium	UBERON:0002349	50.25	gold quality
gastrocnemius	UBERON:0001388	50.09	gold quality
prefrontal cortex	UBERON:0000451	49.61	gold quality
islet of Langerhans	UBERON:0000006	48.80	silver quality
ectocervix	UBERON:0012249	48.45	gold quality
adult organism	UBERON:0007023	48.21	silver quality
quadriceps femoris	UBERON:0001377	47.25	gold quality
muscle layer of sigmoid colon	UBERON:0035805	47.12	gold quality
body of uterus	UBERON:0009853	47.04	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.47

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.