LINC02848

Summary

LINC02848 (long intergenic non-protein coding RNA 2848, HGNC:54384) is a long non-coding RNA gene on chromosome 7q11.21.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54384
Approved symbol	LINC02848
Name	long intergenic non-protein coding RNA 2848
Location	7q11.21
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000226581
Ensembl biotype	lncRNA
Entrez	107986806
RNAcentral	URS00026A2142 — lncRNA, 572 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 48 — 48 lncRNA

ENST00000450544, ENST00000655394, ENST00000656045, ENST00000656125, ENST00000656711, ENST00000656723, ENST00000659774, ENST00000660806, ENST00000669412, ENST00000669791, ENST00000691281, ENST00000692676, ENST00000701114, ENST00000702549, ENST00000753464, ENST00000753465, ENST00000753466, ENST00000753467, ENST00000753468, ENST00000753469, ENST00000753470, ENST00000753471, ENST00000753472, ENST00000753473, ENST00000753474, ENST00000753475, ENST00000753476, ENST00000753477, ENST00000753478, ENST00000753479, ENST00000753480, ENST00000753481, ENST00000753482, ENST00000753483, ENST00000753484, ENST00000753485, ENST00000753486, ENST00000753487, ENST00000753488, ENST00000753489, ENST00000753490, ENST00000753491, ENST00000753492, ENST00000753493, ENST00000753494, ENST00000753495, ENST00000753496, ENST00000753497

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000450544 — 4 exons

Exon	Start	End
ENSE00001662955	63904612	63904738
ENSE00001771791	63914124	63914217
ENSE00004100665	63917795	63917997
ENSE00004100688	63900814	63901038

Expression profiles

Bgee: expression breadth ubiquitous, 156 present calls, max score 80.63.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1888 / max 8.2869, expressed in 117 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
78787	0.1341	81
78788	0.0547	25

Top tissues by expression

240 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
left testis	UBERON:0004533	80.63	gold quality
right testis	UBERON:0004534	80.53	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	79.57	gold quality
testis	UBERON:0000473	78.74	gold quality
sperm	CL:0000019	74.64	gold quality
colonic epithelium	UBERON:0000397	70.79	silver quality
buccal mucosa cell	CL:0002336	69.83	silver quality
C1 segment of cervical spinal cord	UBERON:0006469	66.47	gold quality
spinal cord	UBERON:0002240	64.21	gold quality
hypothalamus	UBERON:0001898	64.09	gold quality
cerebellar hemisphere	UBERON:0002245	63.91	gold quality
cerebellar cortex	UBERON:0002129	63.79	gold quality
right hemisphere of cerebellum	UBERON:0014890	63.19	gold quality
adenohypophysis	UBERON:0002196	62.80	gold quality
hindlimb stylopod muscle	UBERON:0004252	62.76	gold quality
cortical plate	UBERON:0005343	62.31	gold quality
cerebellum	UBERON:0002037	62.27	gold quality
prefrontal cortex	UBERON:0000451	61.16	gold quality
islet of Langerhans	UBERON:0000006	60.97	gold quality
pituitary gland	UBERON:0000007	60.55	gold quality
ventricular zone	UBERON:0003053	60.37	gold quality
amygdala	UBERON:0001876	59.56	gold quality
sural nerve	UBERON:0015488	59.33	silver quality
nucleus accumbens	UBERON:0001882	59.26	gold quality
smooth muscle tissue	UBERON:0001135	59.10	gold quality
anterior cingulate cortex	UBERON:0009835	59.10	gold quality
substantia nigra	UBERON:0002038	59.02	gold quality
right lobe of thyroid gland	UBERON:0001119	59.01	gold quality
right uterine tube	UBERON:0001302	59.01	gold quality
body of uterus	UBERON:0009853	58.93	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.91

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.