LINC02858

Summary

LINC02858 (long intergenic non-protein coding RNA 2858, HGNC:54395) is a long non-coding RNA gene on chromosome 16p12.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54395
Approved symbol	LINC02858
Name	long intergenic non-protein coding RNA 2858
Location	16p12.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000285869
Ensembl biotype	lncRNA
Entrez	105371113
RNAcentral	URS0002A29630 — lncRNA, 1491 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000648468

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000648468 — 3 exons

Exon	Start	End
ENSE00003832023	19335194	19335583
ENSE00004085957	19334011	19334284
ENSE00004085958	19336980	19337806

Expression profiles

Bgee: expression breadth broad, 39 present calls, max score 58.62.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0106 / max 9.0217, expressed in 3 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
153000	0.0106	3

Top tissues by expression

39 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
left testis	UBERON:0004533	58.62	gold quality
testis	UBERON:0000473	57.98	gold quality
right testis	UBERON:0004534	56.68	gold quality
Ammon’s horn	UBERON:0001954	52.21	silver quality
blood	UBERON:0000178	51.77	silver quality
multicellular organism	UBERON:0000468	51.67	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	51.29	gold quality
liver	UBERON:0002107	50.13	silver quality
cortex of kidney	UBERON:0001225	49.47	silver quality
gastrocnemius	UBERON:0001388	47.71	gold quality
amygdala	UBERON:0001876	47.34	gold quality
right uterine tube	UBERON:0001302	46.76	gold quality
islet of Langerhans	UBERON:0000006	46.49	silver quality
muscle layer of sigmoid colon	UBERON:0035805	46.03	gold quality
esophagus mucosa	UBERON:0002469	45.71	gold quality
cerebral cortex	UBERON:0000956	45.51	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	45.47	silver quality
stomach	UBERON:0000945	44.95	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	43.83	gold quality
colon	UBERON:0001155	43.79	gold quality
intestine	UBERON:0000160	43.77	gold quality
transverse colon	UBERON:0001157	42.85	gold quality
left adrenal gland	UBERON:0001234	42.59	silver quality
body of stomach	UBERON:0001161	42.27	silver quality
minor salivary gland	UBERON:0001830	42.22	gold quality
Brodmann (1909) area 9	UBERON:0013540	42.12	silver quality
left adrenal gland cortex	UBERON:0035825	42.10	silver quality
skin of abdomen	UBERON:0001416	41.47	silver quality
prostate gland	UBERON:0002367	41.27	silver quality
endocervix	UBERON:0000458	40.79	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.62

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.