LINC02859

Summary

LINC02859 (long intergenic non-protein coding RNA 2859, HGNC:54399) is a long non-coding RNA gene on chromosome 11p14.1.

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54399
Approved symbol	LINC02859
Name	long intergenic non-protein coding RNA 2859
Location	11p14.1
Locus type	RNA, long non-coding
Status	Approved
Aliases	LncRNA-LOC101928316
Entrez	101928316
RNAcentral	URS00026A22B0 — lncRNA, 2314 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 0

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

None — 0 exons

Expression profiles

Top tissues by expression

0 total, by Bgee expression score (0-100, higher = more expressed):

Regulation

Is transcription factor: no

Literature-anchored findings (GeneRIF, showing 1)

• Results suggested that gastric cancer tissues downregulated lncRNA LOC101928316 may be potential biomarker for diagnosis and prognosis of gastric cancer. (PMID:31207155)

Cross-species orthologs

0 orthologs

Protein

Protein identifiers

Canonical reviewed UniProt: None (reviewed: )

All UniProt accessions (0):

RefSeq proteins (0): (*=MANE)

Domains & families (InterPro)

Structure

Experimental structures (PDB)

0 structures.

Predicted structure (AlphaFold)

Function

Pathways and Gene Ontology

Reactome pathways

0 pathways

MSigDB gene sets: 0 (showing top):

GO Biological Process (0):

GO Molecular Function (0):

GO Cellular Component (0):

Protein interactions and networks

STRING

0 interactions, top by confidence (×1000):

IntAct

0 interactions, top by confidence:

SIGNOR signaling

0 interactions.

Disease & clinical

Clinical variants and AI predictions

ClinVar

0 variants total. Per-class counts are floors (≥ shown; pagination cap):

Classification	Count (floor)
Pathogenic	0
Likely pathogenic	0
Uncertain significance	0
Likely benign	0
Benign	0

Top pathogenic / likely-pathogenic (0)

SpliceAI

0 predictions. Top by Δscore:

AlphaMissense

0 scored. Top likely-pathogenic:

dbSNP variants (sampled 300 via entrez): RS1000006404 (11:30709951 A>G), RS1000019892 (11:30734012 A>C), RS1000023872 (11:30694290 G>T), RS1000089329 (11:30688571 T>G), RS1000119202 (11:30722243 T>A,G), RS1000160032 (11:30717106 C>T), RS1000197118 (11:30699736 C>A), RS1000244017 (11:30694041 T>C), RS1000250534 (11:30707702 A>G), RS1000277761 (11:30688905 G>A), RS1000360884 (11:30714147 A>G), RS1000422221 (11:30705705 A>C,T), RS1000448164 (11:30701864 TCTC>T), RS1000485517 (11:30720794 C>A), RS1000542110 (11:30717533 T>C)

Disease associations

OMIM: gene `` | disease phenotypes:

GenCC curated gene-disease

Mondo (0):

Orphanet (0):

HPO phenotypes

0 total (0 of 0 shown, HPO-id order):

GWAS associations

0 associations (top):

Drugs & pharmacology

Drug and pharmacology data

Is drug target: no

PharmGKB: 0 entries

Clinical trials (associated diseases)

0 trials via MONDO — disease-level, not drug-specific.