LINC02865

Summary

LINC02865 (long intergenic non-protein coding RNA 2865, HGNC:54516) is a long non-coding RNA gene on chromosome 6q23.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54516
Approved symbol	LINC02865
Name	long intergenic non-protein coding RNA 2865
Location	6q23.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000229922
Ensembl biotype	lncRNA
Entrez	116435283
RNAcentral	URS00025E356A — lncRNA, 782 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 4 lncRNA

ENST00000417800, ENST00000434437, ENST00000752757, ENST00000752758

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000417800 — 2 exons

Exon	Start	End
ENSE00001613395	137972243	137972522
ENSE00001781073	137945366	137945466

Expression profiles

Bgee: expression breadth ubiquitous, 122 present calls, max score 94.04.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.2338 / max 197.2858, expressed in 32 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
70098	0.1063	26
70097	0.0870	22
70099	0.0405	19

Top tissues by expression

122 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	94.04	gold quality
corpus callosum	UBERON:0002336	78.14	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	74.99	gold quality
bone marrow cell	CL:0002092	72.90	gold quality
ganglionic eminence	UBERON:0004023	69.87	gold quality
endometrium	UBERON:0001295	69.69	gold quality
monocyte	CL:0000576	68.90	gold quality
sural nerve	UBERON:0015488	68.76	gold quality
calcaneal tendon	UBERON:0003701	68.67	gold quality
hindlimb stylopod muscle	UBERON:0004252	64.93	gold quality
skeletal muscle tissue	UBERON:0001134	63.06	gold quality
bone marrow	UBERON:0002371	63.00	gold quality
lymph node	UBERON:0000029	62.38	gold quality
apex of heart	UBERON:0002098	62.19	gold quality
stromal cell of endometrium	CL:0002255	62.12	gold quality
tonsil	UBERON:0002372	62.03	gold quality
primary visual cortex	UBERON:0002436	60.88	gold quality
vermiform appendix	UBERON:0001154	60.41	gold quality
superior frontal gyrus	UBERON:0002661	59.50	gold quality
prefrontal cortex	UBERON:0000451	59.46	gold quality
cortex of kidney	UBERON:0001225	58.45	gold quality
islet of Langerhans	UBERON:0000006	58.25	gold quality
muscle of leg	UBERON:0001383	58.20	gold quality
subcutaneous adipose tissue	UBERON:0002190	57.61	gold quality
blood	UBERON:0000178	57.58	gold quality
gastrocnemius	UBERON:0001388	57.06	gold quality
adrenal tissue	UBERON:0018303	56.89	gold quality
gall bladder	UBERON:0002110	56.38	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	56.15	gold quality
rectum	UBERON:0001052	56.06	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.00

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.