LINC02866

Summary

LINC02866 (long intergenic non-protein coding RNA 2866, HGNC:54518) is a long non-coding RNA gene on chromosome 8p11.21.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54518
Approved symbol	LINC02866
Name	long intergenic non-protein coding RNA 2866
Location	8p11.21
Locus type	RNA, long non-coding
Status	Approved
Aliases	RP11-359E19.2
Ensembl gene	ENSG00000253665
Ensembl biotype	lncRNA
Entrez	105379385
RNAcentral	URS00026A219B — lncRNA, 1955 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 39 — 39 lncRNA

ENST00000520487, ENST00000521257, ENST00000524098, ENST00000715558, ENST00000715559, ENST00000715560, ENST00000715561, ENST00000725466, ENST00000725467, ENST00000725468, ENST00000725469, ENST00000725470, ENST00000725471, ENST00000725472, ENST00000725473, ENST00000725474, ENST00000725475, ENST00000725476, ENST00000725477, ENST00000725478, ENST00000725479, ENST00000725480, ENST00000725481, ENST00000725482, ENST00000725483, ENST00000725484, ENST00000725485, ENST00000725486, ENST00000725487, ENST00000725488, ENST00000725489, ENST00000725490, ENST00000725491, ENST00000725492, ENST00000725493, ENST00000725494, ENST00000725495, ENST00000725496, ENST00000725497

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000520487 — 5 exons

Exon	Start	End
ENSE00004027217	40171717	40171793
ENSE00004027219	40162707	40162746
ENSE00004027225	40161462	40161559
ENSE00004049056	40157976	40158263
ENSE00004049057	40172301	40172612

Expression profiles

Bgee: expression breadth broad, 71 present calls, max score 82.91.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0091 / max 6.2634, expressed in 4 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
88623	0.0091	4

Top tissues by expression

71 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	82.91	silver quality
colonic epithelium	UBERON:0000397	60.72	silver quality
urinary bladder	UBERON:0001255	57.89	gold quality
muscle layer of sigmoid colon	UBERON:0035805	53.20	gold quality
monocyte	CL:0000576	52.49	silver quality
rectum	UBERON:0001052	51.40	gold quality
colon	UBERON:0001155	50.96	gold quality
myometrium	UBERON:0001296	50.81	gold quality
blood	UBERON:0000178	50.54	silver quality
intestine	UBERON:0000160	50.21	gold quality
tonsil	UBERON:0002372	49.99	gold quality
tibial nerve	UBERON:0001323	49.96	gold quality
calcaneal tendon	UBERON:0003701	49.94	silver quality
adult mammalian kidney	UBERON:0000082	49.68	gold quality
prefrontal cortex	UBERON:0000451	49.56	gold quality
liver	UBERON:0002107	49.56	silver quality
vermiform appendix	UBERON:0001154	49.13	gold quality
transverse colon	UBERON:0001157	47.83	gold quality
islet of Langerhans	UBERON:0000006	47.40	gold quality
right lobe of liver	UBERON:0001114	47.26	silver quality
smooth muscle tissue	UBERON:0001135	47.01	gold quality
pancreas	UBERON:0001264	47.00	gold quality
gall bladder	UBERON:0002110	46.68	gold quality
lower esophagus muscularis layer	UBERON:0035833	46.51	gold quality
upper lobe of left lung	UBERON:0008952	46.08	gold quality
esophagus	UBERON:0001043	46.04	gold quality
stomach	UBERON:0000945	45.86	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	45.78	gold quality
body of stomach	UBERON:0001161	45.73	gold quality
body of pancreas	UBERON:0001150	45.57	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	2.95

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.