LINC02871

Summary

LINC02871 (long intergenic non-protein coding RNA 2871, HGNC:16180) is a long non-coding RNA gene on chromosome 20p12.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:16180
Approved symbol	LINC02871
Name	long intergenic non-protein coding RNA 2871
Location	20p12.2
Locus type	RNA, long non-coding
Status	Approved
Aliases	dJ727I10.1
Ensembl gene	ENSG00000125899
Ensembl biotype	lncRNA
Entrez	728434
RNAcentral	URS0000BC43F1 — lncRNA, 486 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 9 — 9 lncRNA

ENST00000378252, ENST00000603180, ENST00000603985, ENST00000659767, ENST00000662726, ENST00000716707, ENST00000716708, ENST00000716709, ENST00000716710

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000378252 — 11 exons

Exon	Start	End
ENSE00001476835	11028162	11028284
ENSE00001476839	11027751	11027906
ENSE00003859684	11026445	11026574
ENSE00004030472	10998438	10998698
ENSE00004030475	11004942	11005083
ENSE00004030477	10986605	10986757
ENSE00004030478	10991598	10991935
ENSE00004030483	10987464	10987531
ENSE00004030487	11029191	11029455
ENSE00004030489	10988105	10988173
ENSE00004030490	10996123	10996539

Expression profiles

Bgee: expression breadth ubiquitous, 158 present calls, max score 96.21.

Top tissues by expression

253 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sperm	CL:0000019	96.21	gold quality
buccal mucosa cell	CL:0002336	84.80	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.31	gold quality
mucosa of paranasal sinus	UBERON:0005030	73.37	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	71.37	gold quality
mucosa of transverse colon	UBERON:0004991	67.93	gold quality
bone marrow cell	CL:0002092	67.89	silver quality
epithelial cell of pancreas	CL:0000083	67.23	gold quality
left testis	UBERON:0004533	65.78	gold quality
monocyte	CL:0000576	65.69	gold quality
leukocyte	CL:0000738	65.55	gold quality
right testis	UBERON:0004534	65.36	gold quality
transverse colon	UBERON:0001157	63.93	gold quality
tibialis anterior	UBERON:0001385	63.88	silver quality
testis	UBERON:0000473	63.63	gold quality
ileal mucosa	UBERON:0000331	63.22	silver quality
ganglionic eminence	UBERON:0004023	62.29	gold quality
hindlimb stylopod muscle	UBERON:0004252	61.60	gold quality
right lung	UBERON:0002167	61.40	gold quality
granulocyte	CL:0000094	61.34	gold quality
rectum	UBERON:0001052	61.02	gold quality
smooth muscle tissue	UBERON:0001135	60.68	gold quality
islet of Langerhans	UBERON:0000006	60.66	gold quality
pancreatic ductal cell	CL:0002079	60.65	silver quality
right adrenal gland cortex	UBERON:0035827	60.56	gold quality
mucosa of stomach	UBERON:0001199	60.42	gold quality
apex of heart	UBERON:0002098	60.32	gold quality
muscle layer of sigmoid colon	UBERON:0035805	60.25	gold quality
ventricular zone	UBERON:0003053	60.23	gold quality
omental fat pad	UBERON:0010414	59.43	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.79

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.